Evidence map›Paper›PMID 24215910›Full record

ArticleAnalytical biochemistry2014

Weak protein-protein interactions revealed by immiscible filtration assisted by surface tension.

Scott M Berry, Emily N Chin, Shawn S Jackson, Lindsay N Strotman, Mohit Goel, Nancy E Thompson, Caroline M Alexander, Shigeki Miyamoto, Richard R Burgess, David J Beebe

Abstract read
In one paragraph

Article in Analytical biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Scott M BerryDepartment of Biomedical Engineering, University of Wisconsin at Madison, Madison, WI 53705, USA. Electronic address: scott.michael.berry@gmail.com.
Emily N ChinDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
Shawn S JacksonDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
Lindsay N StrotmanDepartment of Biomedical Engineering, University of Wisconsin at Madison, Madison, WI 53705, USA.
Mohit GoelDepartment of Biotechnology, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.
Nancy E ThompsonDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
Caroline M AlexanderDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
Shigeki MiyamotoDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
Richard R BurgessDepartment of Oncology, University of Wisconsin at Madison, Madison, WI 53705, USA.
David J BeebeDepartment of Biomedical Engineering, University of Wisconsin at Madison, Madison, WI 53705, USA.
University of Wisconsin–Madison · USIndian Institute of Technology Guwahati · IN

Funding

INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Regulation of NEMO modifications in radiation-induced NF-kB signalingR01CA077474 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 2000 to 2014
$4.0M
Microchannel cell-based assays to enable cancer researchR33CA137673 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI BEEBE, DAVID J · 2009 to 2011
$1.4M
Enabling NF-kB Signal Transduction Studies in Primary Multiple Myeloma CellsR01CA155192 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI BEEBE, DAVID J, MIYAMOTO, SHIGEKI · 2012 to 2016
$1.4M
Regulation of NF-kappaB by Small Ubiquitin-Like ModifiersR01GM083681 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 2010 to 2013
$1.1M
Defining NEMO interactions to selectively inhibit NF-kB activation by DNA damageF30CA168097 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, SHAWN SIAVASH · 2013 to 2014
$74k
NCI NIH HHS 5R01CA077474NCI NIH HHS 5R33CA137673NCI NIH HHS F30 CA168097NCI NIH HHS R01 CA077474NCI NIH HHS R01 CA155192NCI NIH HHS R33 CA137673NIGMS NIH HHS 5R01GM083681NIGMS NIH HHS R01 GM083681NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Biological mechanisms are often mediated by transient interactions between multiple proteins. The isolation of intact protein complexes is essential to understanding biochemical processes and an important prerequisite for identifying new drug targets and biomarkers. However, low-affinity interactions are often difficult to detect. Here, we use a newly described method called immiscible filtration assisted by surface tension (IFAST) to isolate proteins under defined binding conditions. This method, which gives a near-instantaneous isolation, enables significantly higher recovery of transient complexes compared to current wash-based protocols, which require reequilibration at each of several wash steps, resulting in protein loss. The method moves proteins, or protein complexes, captured on a solid phase through one or more immiscible-phase barriers that efficiently exclude the passage of nonspecific material in a single operation. We use a previously described polyol-responsive monoclonal antibody to investigate the potential of this new method to study protein binding. In addition, difficult-to-isolate complexes involving the biologically and clinically important Wnt signaling pathway were isolated. We anticipate that this simple, rapid method to isolate intact, transient complexes will enable the discoveries of new signaling pathways, biomarkers, and drug targets.

Indexed as

Amino Acid SequenceAnimalsAntibodies, MonoclonalCell LineFiltrationGreen Fluorescent ProteinsMiceProtein BindingProteinsSurface TensionTime FactorsWnt Signaling PathwayAntibodies, MonoclonalGreen Fluorescent ProteinsProteinsExclusion-based sample preparationGlycogen synthase kinase-3βGreen fluorescent proteinImmunoprecipitationLow-density lipoprotein receptorPolyol-responsive

Identifiers

PMID24215910
PMCPMC3897128
OpenAlexW2081874185

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.