Evidence map›Paper›PMID 24214975›Full record

ArticleThe Journal of biological chemistry2013

Several cis-regulatory elements control mRNA stability, translation efficiency, and expression pattern of Prrxl1 (paired related homeobox protein-like 1).

Isabel Regadas, Mariana Raimundo Matos, Filipe Almeida Monteiro, José Luis Gómez-Skarmeta, Deolinda Lima, José Bessa, Fernando Casares, Carlos Reguenga

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Isabel RegadasFrom the Departamento de Biologia Experimental, Faculdade de Medicina do Porto, Universidade do Porto, Porto 4200-319, Portugal.
Mariana Raimundo Matos
Filipe Almeida Monteiro
José Luis Gómez-Skarmeta
Deolinda Lima
José Bessa
Fernando Casares
Carlos Reguenga
Universidade do Porto · PTJunta de Andalucía · ESConsejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The homeodomain transcription factor Prrxl1/DRG11 has emerged as a crucial molecule in the establishment of the pain circuitry, in particular spinal cord targeting of dorsal root ganglia (DRG) axons and differentiation of nociceptive glutamatergic spinal cord neurons. Despite Prrxl1 importance in the establishment of the DRG-spinal nociceptive circuit, the molecular mechanisms that regulate its expression along development remain largely unknown. Here, we show that Prrxl1 transcription is regulated by three alternative promoters (named P1, P2, and P3), which control the expression of three distinct Prrxl1 5'-UTR variants, named 5'-UTR-A, 5'-UTR-B, and 5'-UTR-C. These 5'-UTR sequences confer distinct mRNA stability and translation efficiency to the Prrxl1 transcript. The most conserved promoter (P3) contains a TATA-box and displays in vivo enhancer activity in a pattern that overlaps with the zebrafish Prrxl1 homologue, drgx. Regulatory modules present in this sequence were identified and characterized, including a binding site for Phox2b. Concomitantly, we demonstrate that zebrafish Phox2b is required for the expression of drgx in the facial, glossopharyngeal, and vagal cranial ganglia.

Indexed as

5' Untranslated RegionsRNA StabilityTranscription, GeneticAnimalsBase SequenceBinding SitesGene Expression Regulation, DevelopmentalHEK293 CellsHeLa CellsHomeodomain ProteinsHumansMiceMolecular Sequence DataNerve Tissue ProteinsNeuronsPC12 Cells5' Untranslated RegionsHomeodomain ProteinsNBPhox proteinNerve Tissue ProteinsPrrxl1 protein, mouseRNA, MessengerTranscription Factors5′-UTRAlternative PromotersGene RegulationNeurodevelopmentPainPhox2bPromotersPrrxl1Sensory NeuronsTranscription/Developmental Factors

Identifiers

PMID24214975
PMCPMC3868744
OpenAlexW2101270227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.