Evidence map›Paper›PMID 24214945›Full record

ArticleJournal of bacteriology2014

Protection from oxidative stress relies mainly on derepression of OxyR-dependent KatB and Dps in Shewanella oneidensis.

Yaoming Jiang, Yangyang Dong, Qixia Luo, Ning Li, Genfu Wu, Haichun Gao

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
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  6. Identification of the organic peroxide scavenging system ofApplied and environmental microbiology · 2024
    Article
  7. Review
  8. Article
  9. Article
  10. Effects of OxyR regulator on oxidative stress, Apx toxin secretion and virulence ofFrontiers in cellular and infection microbiology · 2023
    Article
  11. Comparative genome analysis of the genusFrontiers in microbiology · 2023
    Article
  12. Critical Effect of HMicrobiology spectrum · 2022
    Article
  13. Review
  14. Article
  15. Recent Advances in the Siderophore Biology ofFrontiers in microbiology · 2022
    Review
  16. Life (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Distinct HFrontiers in microbiology · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yaoming JiangInstitute of Microbiology and College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Yangyang Dong
Qixia Luo
Ning Li
Genfu Wu
Haichun Gao
Zhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shewanella thrives in redox-stratified environments where accumulation of H2O2 becomes inevitable because of the chemical oxidation of reduced metals, sulfur species, or organic molecules. As a research model, the representative species Shewanella oneidensis has been extensively studied for its response to various stresses. However, little progress has been made toward an understanding of the physiological and genetic responses of this bacterium to oxidative stress, which is critically relevant to its application as a dissimilatory metal-reducing bacterium. In this study, we systematically investigated the mechanism underlying the response to H2O2 at cellular, genomic, and molecular levels. Using transcriptional profiling, we found that S. oneidensis is hypersensitive to H2O2 in comparison with Escherichia coli, and well-conserved defense genes such as ahpCF, katB, katG, and dps appear to form the first line of defense, whereas iron-sulfur-protecting proteins may not play a significant role. Subsequent identification and characterization of an analogue of the E. coli oxyR gene revealed that S. oneidensis OxyR is the master regulator that mediates the bacterial response to H2O2-induced oxidative stress by directly repressing or activating the defense genes. The sensitivity of S. oneidensis to H2O2 is likely attributable to the lack of an inducible manganese import mechanism during stress. To cope with stress, major strategies that S. oneidensis adopts include rapid removal of the oxidant and restriction of intracellular iron concentrations, both of which are achieved predominantly by derepression of the katB and dps genes.

Indexed as

Gene Expression Regulation, BacterialOxidative StressStress, PhysiologicalBacterial ProteinsCatalaseDNA-Binding ProteinsEscherichia coliGene Expression ProfilingHydrogen PeroxideShewanellaTrans-ActivatorsBacterial ProteinsCatalaseDNA-Binding ProteinsDPS protein, BacteriaHydrogen PeroxideTrans-Activators

Identifiers

PMID24214945
PMCPMC3911244
OpenAlexW2052602827

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.