Evidence map›Paper›PMID 24212883›Full record

ArticleNature genetics2014

A large-scale screen for coding variants predisposing to psoriasis.

Huayang Tang, Xin Jin, Yang Li, Hui Jiang, Xianfa Tang, Xu Yang, Hui Cheng, Ying Qiu, Gang Chen, Junpu Mei and 57 more

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In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 6 pooled it
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 6 syntheses or guidelines pooled it, 216 citations in OpenAlex.

  1. Associations betweenBioMed research international · 2021
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

67 authors at 14 institutions in 2 countries.

Huayang Tang1] Department of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China. [2].
Xin Jin1] BGI-Shenzhen, Shenzhen, China. [2] School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, China. [3].
Yang Li1] Department of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China. [2].
Hui Jiang1] BGI-Shenzhen, Shenzhen, China. [2].
Xianfa Tang1] Department of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China. [2].
Xu YangBGI-Shenzhen, Shenzhen, China.
Hui ChengDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Ying QiuDepartment of Dermatology, Jining No. 1 People's Hospital, Jining, Shandong, China.
Gang ChenDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Junpu MeiBGI-Shenzhen, Shenzhen, China.
Fusheng ZhouDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Renhua WuBGI-Shenzhen, Shenzhen, China.
Xianbo ZuoDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Yong ZhangBGI-Shenzhen, Shenzhen, China.
Xiaodong ZhengDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Qi CaiDepartment of Dermatology, Second Hospital, Chengdu, China.
Xianyong YinDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Cheng QuanDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Haojing ShaoBGI-Shenzhen, Shenzhen, China.
Yong CuiDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Fangzhen TianDepartment of Dermatology, Jining No. 1 People's Hospital, Jining, Shandong, China.
Xia ZhaoBGI-Shenzhen, Shenzhen, China.
Hong LiuShandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Science, Jinan, China.
Fengli XiaoDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Fengping XuBGI-Shenzhen, Shenzhen, China.
Jianwen HanDepartment of Dermatology, Affiliated Hospital of Inner Mongolia Medical College, Huhehot, China.
Dongmei ShiDepartment of Dermatology, Jining No. 1 People's Hospital, Jining, Shandong, China.
Anping ZhangDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Cheng ZhouDepartment of Dermatology, Peking University People's Hospital, Beijing, China.
Qibin LiBGI-Shenzhen, Shenzhen, China.
Xing FanDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Liya LinBGI-Shenzhen, Shenzhen, China.
Hongqing TianShandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Science, Jinan, China.
Zaixing WangDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Huiling FuBGI-Shenzhen, Shenzhen, China.
Fang WangDepartment of Dermatology, Peking University People's Hospital, Beijing, China.
Baoqi YangShandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Science, Jinan, China.
Shaowei HuangBGI-Shenzhen, Shenzhen, China.
Bo LiangDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Xuefeng XieBGI-Shenzhen, Shenzhen, China.
Yunqing RenDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Qingquan GuBGI-Shenzhen, Shenzhen, China.
Guangdong WenDepartment of Dermatology, Peking University People's Hospital, Beijing, China.
Yulin SunState Key Laboratory of Molecular Oncology, Cancer Institute & Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College and Center of Basic Medical Sciences, Navy General Hospital, Beijing, China.
Xueli WuBGI-Shenzhen, Shenzhen, China.
Lin DangDepartment of Dermatology, Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Min XiaBGI-Shenzhen, Shenzhen, China.
Junjun ShanDepartment of Dermatology, Third People's Hospital of Hangzhou, Hangzhou, China.
Tianhang LiDepartment of Dermatology, Jining No. 1 People's Hospital, Jining, Shandong, China.
Lin YangBGI-Shenzhen, Shenzhen, China.
Xiuyun ZhangDepartment of Dermatology, Jining No. 1 People's Hospital, Jining, Shandong, China.
Yuzhen LiDepartment of Dermatology, Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Chundi HeDepartment of Dermatology, No. 1 Hospital of China Medical University, Shenyang, China.
Aie XuDepartment of Dermatology, Third People's Hospital of Hangzhou, Hangzhou, China.
Liping WeiSchool of Life Sciences, Peking University, Beijing, China.
Xiaohang ZhaoState Key Laboratory of Molecular Oncology, Cancer Institute & Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College and Center of Basic Medical Sciences, Navy General Hospital, Beijing, China.
Xinghua GaoDepartment of Dermatology, No. 1 Hospital of China Medical University, Shenyang, China.
Jinhua XuDepartment of Dermatology, Huashan Hospital of Fudan University, Shanghai, China.
Furen ZhangShandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Science, Jinan, China.
Jianzhong ZhangDepartment of Dermatology, Peking University People's Hospital, Beijing, China.
Yingrui LiBGI-Shenzhen, Shenzhen, China.
Liangdan SunDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Jianjun LiuDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Runsheng ChenInstitute of Biophysics of the Chinese Academy of Sciences, Beijing, China.
Sen YangDepartment of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China.
Jun Wang1] BGI-Shenzhen, Shenzhen, China. [2] Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark. [3] Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Xuejun Zhang1] Department of Dermatology, First Affiliated Hospital, Anhui Medical University, Hefei, China. [2] Department of Dermatology, Huashan Hospital of Fudan University, Shanghai, China.
BGI Group (China) · CNAnhui Medical University · CNJining First People's Hospital · CNPeking University · CNShandong Provincial Institute of Dermatology and Venereology · CNChina Medical University · CNThird People's Hospital of Hangzhou · CNChengdu Second People's Hospital · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CNFudan University · CNHarbin Medical University · CNInner Mongolia Medical College Hospital · CNUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To explore the contribution of functional coding variants to psoriasis, we analyzed nonsynonymous single-nucleotide variants (SNVs) across the genome by exome sequencing in 781 psoriasis cases and 676 controls and through follow-up validation in 1,326 candidate genes by targeted sequencing in 9,946 psoriasis cases and 9,906 controls from the Chinese population. We discovered two independent missense SNVs in IL23R and GJB2 of low frequency and five common missense SNVs in LCE3D, ERAP1, CARD14 and ZNF816A associated with psoriasis at genome-wide significance. Rare missense SNVs in FUT2 and TARBP1 were also observed with suggestive evidence of association. Single-variant and gene-based association analyses of nonsynonymous SNVs did not identify newly associated genes for psoriasis in the regions subjected to targeted resequencing. This suggests that coding variants in the 1,326 targeted genes contribute only a limited fraction of the overall genetic risk for psoriasis.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAminopeptidasesAsian PeopleCARD Signaling Adaptor ProteinsCase-Control StudiesConnexin 26ConnexinsFemaleFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferaseGenome-Wide Association StudyGuanylate CyclaseHaplotypesHumansAminopeptidasesCARD14 protein, humanCARD Signaling Adaptor ProteinsConnexin 26ConnexinsERAP1 protein, humanFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferaseGJB2 protein, humanGuanylate CyclaseIL23R protein, humanMembrane ProteinsMinor Histocompatibility AntigensNuclear ProteinsReceptors, InterleukinRNA-Binding ProteinsTARBP1 protein, humanTrans-Activation Responsive RNA-Binding Protein

Identifiers

PMID24212883
OpenAlexW1967937896

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.