Evidence map›Paper›PMID 24210219›Full record

ArticleChemistry & biology2013

Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides.

Anatoli Tchigvintsev, Dmitri Tchigvintsev, Robert Flick, Ana Popovic, Aiping Dong, Xiaohui Xu, Greg Brown, Wenyun Lu, Hong Wu, Hong Cui and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Chemistry & biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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  6. Review
  7. Identification of a Rice Leaf Width GeneInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 3 countries.

Anatoli TchigvintsevDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON M5S 3E5, Canada.
Dmitri Tchigvintsev
Robert Flick
Ana Popovic
Aiping Dong
Xiaohui Xu
Greg Brown
Wenyun Lu
Hong Wu
Hong Cui
Ludmila Dombrowski
Jeong Chan Joo
Natalia Beloglazova
Jinrong Min
Alexei Savchenko
Amy A Caudy
Joshua D Rabinowitz
Alexey G Murzin
Alexander F Yakunin
University of Toronto · CAPrinceton University · USStructural Genomics Consortium · CAMRC Laboratory of Molecular Biology · GB

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Tumor cell metabolism in actionR01CA163591 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI JOSHUA D RABINOWITZ, Eileen P. White · 2012 to 2026
$7.0M
CIHRMedical Research Council MC_U105192716NCI NIH HHS 1R01CA16359-01A1NCI NIH HHS P30 CA016359NIGMS NIH HHS P50 GM071508NIGMS NIH HHS P50GM071508Wellcome Trust
6 · The paper itself

Abstract

Maf (for multicopy associated filamentation) proteins represent a large family of conserved proteins implicated in cell division arrest but whose biochemical activity remains unknown. Here, we show that the prokaryotic and eukaryotic Maf proteins exhibit nucleotide pyrophosphatase activity against 5-methyl-UTP, pseudo-UTP, 5-methyl-CTP, and 7-methyl-GTP, which represent the most abundant modified bases in all organisms, as well as against canonical nucleotides dTTP, UTP, and CTP. Overexpression of the Maf protein YhdE in E. coli cells increased intracellular levels of dTMP and UMP, confirming that dTTP and UTP are the in vivo substrates of this protein. Crystal structures and site-directed mutagenesis of Maf proteins revealed the determinants of their activity and substrate specificity. Thus, pyrophosphatase activity of Maf proteins toward canonical and modified nucleotides might provide the molecular mechanism for a dual role of these proteins in cell division arrest and house cleaning.

Indexed as

Bacillus subtilisConserved SequenceCrystallography, X-RayEscherichia coliEscherichia coli ProteinsHumansMaf Transcription FactorsModels, MolecularMutagenesis, Site-DirectedNucleotidesPyrophosphatasesSaccharomyces cerevisiaeSalmonella typhimuriumSubstrate SpecificityEscherichia coli ProteinsMaf Transcription Factorsnucleotide pyrophosphataseNucleotidesPyrophosphatasesYhdE protein, E coli

Identifiers

PMID24210219
PMCPMC3899018
OpenAlexW2064643666

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.