Evidence map›Paper›PMID 24209961›Full record

ArticleDNA repair2013

Coordination of MYH DNA glycosylase and APE1 endonuclease activities via physical interactions.

Paz J Luncsford, Brittney A Manvilla, Dimeka N Patterson, Shuja S Malik, Jin Jin, Bor-Jang Hwang, Randall Gunther, Snigdha Kalvakolanu, Leonora J Lipinski, Weirong Yuan and 4 more

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Evolutionary Origin ofBiomolecules · 2023
    Article
  8. Noncatalytic Domains in DNA Glycosylases.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Diagnostics (Basel, Switzerland) · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Paz J LuncsfordDepartment of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD 21201, United States.
Brittney A Manvilla
Dimeka N Patterson
Shuja S Malik
Jin Jin
Bor-Jang Hwang
Randall Gunther
Snigdha Kalvakolanu
Leonora J Lipinski
Weirong Yuan
Wuyuan Lu
Alexander C Drohat
A-Lien Lu
Eric A Toth
University of Maryland, Baltimore · USUniversity of Maryland Marlene and Stewart Greenebaum Comprehensive Cancer Center

Funding

Structure and Mechanism of CpG specific DNA glycosylasesR01GM072711 · NIGMS · WADSWORTH CENTER · PI DROHAT, ALEX C · 2005 to 2020
$5.0M
REPAIR OF OXIDATIVELY DAMAGED GUANINES IN HUMANR01CA078391 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI LU-CHANG, A-LIEN L · 1998 to 2013
$3.4M
Repair of Oxidatively Damaged GuaninesR56CA078391 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI LU-CHANG, A-LIEN L · 2008 to 2008
$240k
NCI NIH HHS CA 78391NCI NIH HHS R01 CA078391NCI NIH HHS R56 CA078391NIGMS NIH HHS GM 72711NIGMS NIH HHS R01 GM072711
6 · The paper itself

Abstract

MutY homologue (MYH) is a DNA glycosylase which excises adenine paired with the oxidative lesion 7,8-dihydro-8-oxoguanine (8-oxoG, or G(o)) during base excision repair (BER). Base excision by MYH results in an apurinic/apyrimidinic (AP) site in the DNA where the DNA sugar-phosphate backbone remains intact. A key feature of MYH activity is its physical interaction and coordination with AP endonuclease I (APE1), which subsequently nicks DNA 5' to the AP site. Because AP sites are mutagenic and cytotoxic, they must be processed by APE1 immediately after the action of MYH glycosylase. Our recent reports show that the interdomain connector (IDC) of human MYH (hMYH) maintains interactions with hAPE1 and the human checkpoint clamp Rad9-Rad1-Hus1 (9-1-1) complex. In this study, we used NMR chemical shift perturbation experiments to determine hMYH-binding site on hAPE1. Chemical shift perturbations indicate that the hMYH IDC peptide binds to the DNA-binding site of hAPE1 and an additional site which is distal to the APE1 DNA-binding interface. In these two binding sites, N212 and Q137 of hAPE1 are key mediators of the MYH/APE1 interaction. Intriguingly, despite the fact that hHus1 and hAPE1 both interact with the MYH IDC, hHus1 does not compete with hAPE1 for binding to hMYH. Rather, hHus1 stabilizes the hMYH/hAPE1 complex both in vitro and in cells. This is consistent with a common theme in BER, namely that the assembly of protein-DNA complexes enhances repair by efficiently coordinating multiple enzymatic steps while simultaneously minimizing the release of harmful repair intermediates.

Indexed as

Binding SitesBiocatalysisCell Cycle ProteinsDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA DamageDNA GlycosylasesDNA RepairHumansMagnetic Resonance ImagingMagnetic Resonance SpectroscopyModels, MolecularMutationProtein BindingProtein StabilityAPEX1 protein, humanCell Cycle ProteinsDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesmutY adenine glycosylase7,8-dihydro-8-oxoguanine8-oxoG or G(o)9–1–1APAPE1AP endonucleaseAP-endonuclease 1apurinic/apyrimidinicBacillus stearothermophilus MutYbase excision repairBase excision repairBERbovine serum albuminBSABstMutYCheckpoint clampDNA glycosylaseEc-cMutYEscherichia coli MutY catalytic domainEtBrethidium bromideFglutathione S-transferaseGSThheteronuclear spin quantum coherenceHSQChumanIDCinterdomain connectorlong-patchLPMAPMEFmouse embryonic fibroblastMutY homologueMYH-associated polyposisMYH or MUTYHODNoligodeoxynucleotidesRad9–Rad1–Hus1Regulatory protein interactionsSaccharomyces cerevisiaeS. cerevisiaeSchizosaccharomyces pombesingle-nucleotide patchSNS. pombetetrahydrofuran abasic site analog

Identifiers

PMID24209961
PMCPMC3857741
OpenAlexW1999188839

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.