Evidence map›Paper›PMID 24205493›Full record

ArticleAnnals of laboratory medicine2013

Comparison of methylation profiling in cancerous and their corresponding normal tissues from korean patients with breast cancer.

Eun-Jung Jung, In-Suk Kim, Eun Yup Lee, Jeong-Eun Kang, Sun-Min Lee, Dong Chul Kim, Ju-Yeon Kim, Soon-Tae Park

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Annals of laboratory medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 6 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 6 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Article
  9. Epigenetic alterations in canine mammary cancer.Genetics and molecular biology · 2022
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  10. Review
  11. Methylation Profiles of BRCA1, RASSF1A and GSTP1 in Vietnamese Women with Breast CancerAsian Pacific journal of cancer prevention : APJCP · 2018
    Article
  12. Review
  13. Article
  14. Epigenetic markers in melanoma.Melanoma management · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Eun-Jung JungDivision of Surgical Oncology, Department of Surgery, Gyeongsang National University Hospital, Jinju, Korea.
In-Suk Kim
Eun Yup Lee
Jeong-Eun Kang
Sun-Min Lee
Dong Chul Kim
Ju-Yeon Kim
Soon-Tae Park
Gyeongsang National University Hospital · KRPusan National University Hospital · KRPusan National University Yangsan Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAberrant DNA hypermethylation plays a pivotal role in carcinogenesis and disease progression; therefore, accurate measurement of differential gene methylation patterns among many genes is likely to reveal biomarkers for improved risk assessment. We evaluated the gene hypermethylation profiles of primary breast tumors and their corresponding normal tissues and investigated the association between major clinicopathological features and gene hypermethylation.

methodsA single reaction using methylation-specific multiplex ligation-dependent probe amplification was used to analyze the DNA methylation status of 24 tumor suppressor genes in 60 cancerous tissues and their corresponding normal tissues from patients with primary breast cancer.

resultsIn cancerous breast tissues, 21 of 24 genes displayed promoter methylation in one or more samples. The most frequently methylated genes included RASSF1 (43.3%), APC (31.7%), CDKN2B (25.0%), CDH13 (23.3%), GSTP1 (16.7%), and BRCA1 (10%). APC was associated with lymph node metastasis, and BRCA1 was associated with negative estrogen receptor and negative progesterone receptor expression. In normal breast tissues, 8 of 24 tumor suppressor genes displayed promoter hypermethylation; CDKN2B (28.3%) and RASSF1 (8.3%) hypermethylation were most frequently observed.

conclusionsRASSF1 and CDKN2B hypermethylation in Korean breast cancer patients were the most frequent in cancerous tissue and corresponding normal tissue, respectively. Our data indicates that methylation of specific genes is a frequent event in morphologically normal breast tissues adjacent to breast tumors as well as the corresponding breast cancers. This study also suggests that gene methylation is linked to various pathological features of breast cancer; however, this requires confirmation in a larger study.

Indexed as

DNA MethylationAdultBreastBreast NeoplasmsCyclin-Dependent Kinase Inhibitor p15FemaleHumansLymphatic MetastasisMiddle AgedPromoter Regions, GeneticRepublic of KoreaTumor Suppressor ProteinsCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15RASSF1 protein, humanTumor Suppressor ProteinsBreast cancerCarcinogenesisEpigeneticsMethylation

Identifiers

PMID24205493
PMCPMC3819443
OpenAlexW2148578116

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.