Evidence map›Paper›PMID 24205117›Full record

ArticlePloS one2013

High-resolution NMR reveals secondary structure and folding of amino acid transporter from outer chloroplast membrane.

James D Zook, Trivikram R Molugu, Neil E Jacobsen, Guangxin Lin, Jürgen Soll, Brian R Cherry, Michael F Brown, Petra Fromme

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

James D ZookDepartment of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, United States of America.
Trivikram R Molugu
Neil E Jacobsen
Guangxin Lin
Jürgen Soll
Brian R Cherry
Michael F Brown
Petra Fromme
University of Arizona · USArizona State University · USLudwig-Maximilians-Universität München · DE

Funding

Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
MEMBRANE BASIS OF VISUAL EXCITATIONR01EY012049 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 1998 to 2012
$3.3M
LIPID MODULATION OF RHODOPSIN SIGNALING IN MEMBRANESR01EY018891 · NEI · UNIVERSITY OF ARIZONA · PI BROWN, MICHAEL F · 2008 to 2010
$1.1M
NEI NIH HHS EY012049NEI NIH HHS EY018891NEI NIH HHS R01 EY012049NEI NIH HHS R01 EY018891NIGMS NIH HHS GM095583NIGMS NIH HHS R01 GM095583
6 · The paper itself

Abstract

Solving high-resolution structures for membrane proteins continues to be a daunting challenge in the structural biology community. In this study we report our high-resolution NMR results for a transmembrane protein, outer envelope protein of molar mass 16 kDa (OEP16), an amino acid transporter from the outer membrane of chloroplasts. Three-dimensional, high-resolution NMR experiments on the (13)C, (15)N, (2)H-triply-labeled protein were used to assign protein backbone resonances and to obtain secondary structure information. The results yield over 95% assignment of N, HN, CO, Cα, and Cβ chemical shifts, which is essential for obtaining a high resolution structure from NMR data. Chemical shift analysis from the assignment data reveals experimental evidence for the first time on the location of the secondary structure elements on a per residue basis. In addition T 1Z and T2 relaxation experiments were performed in order to better understand the protein dynamics. Arginine titration experiments yield an insight into the amino acid residues responsible for protein transporter function. The results provide the necessary basis for high-resolution structural determination of this important plant membrane protein.

Indexed as

Amino Acid Transport SystemsChloroplastsMagnetic Resonance SpectroscopyMembrane ProteinsPlant ProteinsProtein Structure, SecondaryAmino Acid Transport SystemsMembrane ProteinsPlant Proteins

Identifiers

PMID24205117
PMCPMC3812221
OpenAlexW1991533506

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.