Evidence map›Paper›PMID 24204963›Full record

ArticlePloS one2013

The immune system GTPase GIMAP6 interacts with the Atg8 homologue GABARAPL2 and is recruited to autophagosomes.

John C Pascall, Sergio Rotondo, Aamir S Mukadam, David Oxley, Judith Webster, Simon A Walker, Jerry Piron, Christine Carter, Nicholas T Ktistakis, Geoffrey W Butcher

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Upregulated small GTPase immunity-associated proteins confer resistance toFrontiers in cellular and infection microbiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Unlocking the gate to GABARAPL2.Biologia futura · 2022
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Integrative analysis of pathway deregulation in obesity.NPJ systems biology and applications · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

John C PascallThe Babraham Institute, Cambridge, Cambridgeshire, United Kingdom.
Sergio Rotondo
Aamir S Mukadam
David Oxley
Judith Webster
Simon A Walker
Jerry Piron
Christine Carter
Nicholas T Ktistakis
Geoffrey W Butcher
Babraham Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/0000C0409Biotechnology and Biological Sciences Research Council BBS/E/B/0000C042Biotechnology and Biological Sciences Research Council BBS/E/B/0000C241Biotechnology and Biological Sciences Research Council BBS/E/B/0000l763Biotechnology and Biological Sciences Research Council BBS/E/B/000C0409Biotechnology and Biological Sciences Research Council BBS/E/B/000C0413
6 · The paper itself

Abstract

The GIMAPs (GTPases of the immunity-associated proteins) are a family of small GTPases expressed prominently in the immune systems of mammals and other vertebrates. In mammals, studies of mutant or genetically-modified rodents have indicated important roles for the GIMAP GTPases in the development and survival of lymphocytes. No clear picture has yet emerged, however, of the molecular mechanisms by which they perform their function(s). Using biotin tag-affinity purification we identified a major, and highly specific, interaction between the human cytosolic family member GIMAP6 and GABARAPL2, one of the mammalian homologues of the yeast autophagy protein Atg8. Chemical cross-linking studies performed on Jurkat T cells, which express both GIMAP6 and GABARAPL2 endogenously, indicated that the two proteins in these cells readily associate with one another in the cytosol under normal conditions. The GIMAP6-GABARAPL2 interaction was disrupted by deletion of the last 10 amino acids of GIMAP6. The N-terminal region of GIMAP6, however, which includes a putative Atg8-family interacting motif, was not required. Over-expression of GIMAP6 resulted in increased levels of endogenous GABARAPL2 in cells. After culture of cells in starvation medium, GIMAP6 was found to localise in punctate structures with both GABARAPL2 and the autophagosomal marker MAP1LC3B, indicating that GIMAP6 re-locates to autophagosomes on starvation. Consistent with this finding, we have demonstrated that starvation of Jurkat T cells results in the degradation of GIMAP6. Whilst these findings raise the possibility that the GIMAPs play roles in the regulation of autophagy, we have been unable to demonstrate an effect of GIMAP6 over-expression on autophagic flux.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsAntibodies, MonoclonalAutophagyAutophagy-Related Protein 8 FamilyBlotting, WesternEnzyme-Linked Immunosorbent AssayGTP PhosphohydrolasesHEK293 CellsHumansHuman Umbilical Vein Endothelial CellsImmune SystemImmunoenzyme TechniquesImmunoprecipitationJurkat CellsMiceAdaptor Proteins, Signal TransducingAntibodies, MonoclonalAutophagy-Related Protein 8 FamilyGABARAPL2 protein, humanGTP PhosphohydrolasesMicrofilament ProteinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID24204963
PMCPMC3804274
OpenAlexW1994314798

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.