Evidence map›Paper›PMID 24204623›Full record

ArticlePloS one2013

New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification.

Renata Servan de Almeida, Saliha Hammoumi, Patricia Gil, François-Xavier Briand, Sophie Molia, Nicolas Gaidet, Julien Cappelle, Véronique Chevalier, Gilles Balança, Abdallah Traoré and 13 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  7. Article
  8. Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2019
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  9. Article
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  12. Article
  13. Review
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  15. History of Newcastle disease in South Africa.The Onderstepoort journal of veterinary research · 2017
    Article
  16. Review
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  19. S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Renata Servan de AlmeidaCIRAD, UMR CMAEE, Montpellier, France ; INRA, UMR1309 CMAEE, Montpellier, France.
Saliha Hammoumi
Patricia Gil
François-Xavier Briand
Sophie Molia
Nicolas Gaidet
Julien Cappelle
Véronique Chevalier
Gilles Balança
Abdallah Traoré
Colette Grillet
Olivier Fridolin Maminiaina
Samia Guendouz
Marthin Dakouo
Kassim Samaké
Ould El Mamy Bezeid
Abbas Diarra
Hassen Chaka
Flavie Goutard
Peter Thompson
Dominique Martinez
Véronique Jestin
Emmanuel Albina

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease (ND) is one of the most lethal diseases of poultry worldwide. It is caused by an avian paramyxovirus 1 that has high genomic diversity. In the framework of an international surveillance program launched in 2007, several thousand samples from domestic and wild birds in Africa were collected and analyzed. ND viruses (NDV) were detected and isolated in apparently healthy fowls and wild birds. However, two thirds of the isolates collected in this study were classified as virulent strains of NDV based on the molecular analysis of the fusion protein and experimental in vivo challenges with two representative isolates. Phylogenetic analysis based on the F and HN genes showed that isolates recovered from poultry in Mali and Ethiopia form new groups, herein proposed as genotypes XIV and sub-genotype VIf with reference to the new nomenclature described by Diel's group. In Madagascar, the circulation of NDV strains of genotype XI, originally reported elsewhere, is also confirmed. Full genome sequencing of five African isolates was generated and an extensive phylogeny reconstruction was carried out based on the nucleotide sequences. The evolutionary distances between groups and the specific amino acid signatures of each cluster allowed us to refine the genotype nomenclature.

Indexed as

GenotypePhylogenyAfricaAnimalsAvulavirusAvulavirus InfectionsEvolution, MolecularGenome, ViralNewcastle DiseasePoultry DiseasesRNA, ViralRNA, Viral

Identifiers

PMID24204623
PMCPMC3799739

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.