Evidence map›Paper›PMID 24204324›Full record

ArticlePLoS genetics2013

High throughput sequencing reveals alterations in the recombination signatures with diminishing Spo11 activity.

Beth Rockmill, Philippe Lefrançois, Karen Voelkel-Meiman, Ashwini Oke, G Shirleen Roeder, Jennifer C Fung

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

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  10. TheProceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Beth RockmillDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Philippe Lefrançois
Karen Voelkel-Meiman
Ashwini Oke
G Shirleen Roeder
Jennifer C Fung
Yale University · USReproductive Science Center · USUniversity of California, San Francisco · US

Funding

Kinetics of Chromosome Synapsis During MeiosisR01GM097213 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FUNG, JENNIFER C · 2011 to 2015
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM097213
6 · The paper itself

Abstract

Spo11 is the topoisomerase-like enzyme responsible for the induction of the meiosis-specific double strand breaks (DSBs), which initiates the recombination events responsible for proper chromosome segregation. Nineteen PCR-induced alleles of SPO11 were identified and characterized genetically and cytologically. Recombination, spore viability and synaptonemal complex (SC) formation were decreased to varying extents in these mutants. Arrest by ndt80 restored these events in two severe hypomorphic mutants, suggesting that ndt80-arrested nuclei are capable of extended DSB activity. While crossing-over, spore viability and synaptonemal complex (SC) formation defects correlated, the extent of such defects was not predictive of the level of heteroallelic gene conversions (prototrophs) exhibited by each mutant. High throughput sequencing of tetrads from spo11 hypomorphs revealed that gene conversion tracts associated with COs are significantly longer and gene conversion tracts unassociated with COs are significantly shorter than in wild type. By modeling the extent of these tract changes, we could account for the discrepancy in genetic measurements of prototrophy and crossover association. These findings provide an explanation for the unexpectedly low prototroph levels exhibited by spo11 hypomorphs and have important implications for genetic studies that assume an unbiased recovery of prototrophs, such as measurements of CO homeostasis. Our genetic and physical data support previous observations of DSB-limited meioses, in which COs are disproportionally maintained over NCOs (CO homeostasis).

Indexed as

Recombination, GeneticAllelesChromosome PairingChromosome SegregationCrossing Over, GeneticDNA Breaks, Double-StrandedDNA RepairEndodeoxyribonucleasesGene ConversionHigh-Throughput Nucleotide SequencingHomeostasisMeiosisMeiotic Recombination Protein SPO11Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynaptonemal ComplexEndodeoxyribonucleasesMeiotic Recombination Protein SPO11Saccharomyces cerevisiae ProteinsSpo11 protein, S cerevisiae

Identifiers

PMID24204324
PMCPMC3814317
OpenAlexW1968457511

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.