Evidence map›Paper›PMID 24204308›Full record

ArticlePLoS genetics2013

A reversible histone H3 acetylation cooperates with mismatch repair and replicative polymerases in maintaining genome stability.

Lyudmila Y Kadyrova, Tony M Mertz, Yu Zhang, Matthew R Northam, Ziwei Sheng, Kirill S Lobachev, Polina V Shcherbakova, Farid A Kadyrov

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. [PRIONPathogens (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Chromatin Structure and Drug Resistance inJournal of fungi (Basel, Switzerland) · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Interaction of proliferating cell nuclear antigen with PMS2 is required for MutLα activation and function in mismatch repair.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Lyudmila Y KadyrovaDepartment of Biochemistry and Molecular Biology, Southern Illinois University School of Medicine, Carbondale, Illinois, United States of America.
Tony M Mertz
Yu Zhang
Matthew R Northam
Ziwei Sheng
Kirill S Lobachev
Polina V Shcherbakova
Farid A Kadyrov
Georgia Institute of Technology · USUniversity of Nebraska Medical Center · USSouthern Illinois University Carbondale · USSouthern Illinois University School of Medicine · US

Funding

Translesion Synthesis DNA Polymerases and Genome InstabilityR01ES015869 · NIEHS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SHCHERBAKOVA, POLINA V · 2009 to 2023
$4.7M
DNA mismatch repair in the nucleosomal environmentR01GM095758 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI KADYROV, FARID · 2013 to 2017
$1.2M
Mechanism and consequences of GAA repeat-mediated chromosomal fragility in yeastR01GM082950 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI LOBACHEV, KIRILL S · 2008 to 2011
$1.2M
NIEHS NIH HHS ES015869NIEHS NIH HHS R01 ES015869NIGMS NIH HHS GM082950NIGMS NIH HHS GM095758NIGMS NIH HHS R01 GM082950NIGMS NIH HHS R01 GM095758
6 · The paper itself

Abstract

Mutations are a major driving force of evolution and genetic disease. In eukaryotes, mutations are produced in the chromatin environment, but the impact of chromatin on mutagenesis is poorly understood. Previous studies have determined that in yeast Saccharomyces cerevisiae, Rtt109-dependent acetylation of histone H3 on K56 is an abundant modification that is introduced in chromatin in S phase and removed by Hst3 and Hst4 in G2/M. We show here that the chromatin deacetylation on histone H3 K56 by Hst3 and Hst4 is required for the suppression of spontaneous gross chromosomal rearrangements, base substitutions, 1-bp insertions/deletions, and complex mutations. The rate of base substitutions in hst3Δ hst4Δ is similar to that in isogenic mismatch repair-deficient msh2Δ mutant. We also provide evidence that H3 K56 acetylation by Rtt109 is important for safeguarding DNA from small insertions/deletions and complex mutations. Furthermore, we reveal that both the deacetylation and acetylation on histone H3 K56 are involved in mutation avoidance mechanisms that cooperate with mismatch repair and the proofreading activities of replicative DNA polymerases in suppressing spontaneous mutagenesis. Our results suggest that cyclic acetylation and deacetylation of chromatin contribute to replication fidelity and play important roles in the protection of nuclear DNA from diverse spontaneous mutations.

Indexed as

AcetylationChromatinChromosome AberrationsDNA-Directed DNA PolymeraseDNA Mismatch RepairDNA ReplicationGenomic InstabilityHistone DeacetylasesHistonesMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseChromatinDNA-Directed DNA PolymeraseHistone DeacetylasesHistonesHst3 protein, S cerevisiaeHst4 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID24204308
PMCPMC3812082
OpenAlexW2072008244

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.