Evidence map›Paper›PMID 24201902›Full record

ArticleNature communications2013

RNA editing regulates transposon-mediated heterochromatic gene silencing.

Yiannis A Savva, James E C Jepson, Yao-Jen Chang, Rachel Whitaker, Brian C Jones, Georges St Laurent, Michael R Tackett, Philipp Kapranov, Nan Jiang, Guyu Du and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Review
  3. Phylogenetic and structural analysis of Hydra ADAR.Archives of biochemistry and biophysics · 2025
    Article
  4. Article
  5. Inflammation and DNA damage: cause, effect or both.Nature reviews. Rheumatology · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Aging mechanisms-A perspective mostly fromAdvanced genetics (Hoboken, N.J.) · 2020
    Article
  12. Article
  13. Article
  14. Organelle aging: Lessons from model organisms.Journal of genetics and genomics = Yi chuan xue bao · 2019
    Review
  15. Mapping the dsRNA World.Cold Spring Harbor perspectives in biology · 2019
    Review
  16. Illuminating spatial A-to-I RNA editing signatures within theProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. The Retrotransposon storm and the dangers of a Collyer's genome.Current opinion in genetics & development · 2018
    Review
  18. RNA Editing and Retrotransposons in Neurology.Frontiers in molecular neuroscience · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yiannis A SavvaDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, 185 Meeting Street, Providence, Rhode Island 02912, USA.
James E C Jepson
Yao-Jen Chang
Rachel Whitaker
Brian C Jones
Georges St Laurent
Michael R Tackett
Philipp Kapranov
Nan Jiang
Guyu Du
Stephen L Helfand
Robert A Reenan
Brown University · USSt. Laurent Institute · US

Funding

TRAINING IN MOLECULAR &CELL BIOLOGY &BIOCHEMISTRYT32GM007601 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 1985 to 2019
$6.4M
Control of Gene Expression and Life SpanR01AG024353 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HELFAND, STEPHEN L · 2004 to 2018
$5.5M
Single Gene Mutants that Confer Longevity in DrosphilaR37AG016667 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HELFAND, STEPHEN L · 2004 to 2014
$3.8M
Predoctoral Training in the Molecular Biology of AgingT32AG041688 · NIA · BROWN UNIVERSITY · PI NICOLA NERETTI, John M Sedivy · 2012 to 2026
$3.5M
Control of Gene Expression and Life SpanRF1AG024353 · NIA · BROWN UNIVERSITY · PI HELFAND, STEPHEN L · 2019 to 2019
$2.5M
Oxidative Damage, Aging and Life SpanR01AG025277 · NIA · BROWN UNIVERSITY · PI HELFAND, STEPHEN L · 2005 to 2009
$1.5M
SINGLE GENE MUTANTS THAT CONFER LONGEVITY IN DROSOPHILAR01AG016667 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HELFAND, STEPHEN L. · 1999 to 2003
$1.3M
NIA NIH HHS AG16667NIA NIH HHS AG24353NIA NIH HHS AG25277NIA NIH HHS R01 AG016667NIA NIH HHS R01 AG024353NIA NIH HHS R01 AG025277NIA NIH HHS R37 AG016667NIA NIH HHS RF1 AG024353NIA NIH HHS T32 AG041688NIGMS NIH HHS T32 GM007601
6 · The paper itself

Abstract

Heterochromatin formation drives epigenetic mechanisms associated with silenced gene expression. Repressive heterochromatin is established through the RNA interference pathway, triggered by double-stranded RNAs (dsRNAs) that can be modified via RNA editing. However, the biological consequences of such modifications remain enigmatic. Here we show that RNA editing regulates heterochromatic gene silencing in Drosophila. We utilize the binding activity of an RNA-editing enzyme to visualize the in vivo production of a long dsRNA trigger mediated by Hoppel transposable elements. Using homologous recombination, we delete this trigger, dramatically altering heterochromatic gene silencing and chromatin architecture. Furthermore, we show that the trigger RNA is edited and that dADAR serves as a key regulator of chromatin state. Additionally, dADAR auto-editing generates a natural suppressor of gene silencing. Lastly, systemic differences in RNA editing activity generates interindividual variation in silencing state within a population. Our data reveal a global role for RNA editing in regulating gene expression.

Indexed as

Gene SilencingAdenosine DeaminaseAnimalsDNA Transposable ElementsDrosophila melanogasterDrosophila ProteinsHeterochromatinProtein BindingRNA, Double-StrandedRNA EditingAdar protein, DrosophilaAdenosine DeaminaseDNA Transposable ElementsDrosophila ProteinsHeterochromatinRNA, Double-Stranded

Identifiers

PMID24201902
PMCPMC3992701
OpenAlexW2047771400

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.