Evidence map›Paper›PMID 24198424›Full record

ArticleJournal of virology2014

Insights into bacteriophage T5 structure from analysis of its morphogenesis genes and protein components.

Yvan Zivanovic, Fabrice Confalonieri, Luc Ponchon, Rudi Lurz, Mohamed Chami, Ali Flayhan, Madalena Renouard, Alexis Huet, Paulette Decottignies, Alan R Davidson and 2 more

Abstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Viruses · 2026
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  4. A dramatic protein fold switch powers a bactericidal nanomachine.bioRxiv : the preprint server for biology · 2026
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  6. Bacterial Schlafens mediate anti-phage defense.bioRxiv : the preprint server for biology · 2025
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  12. Exploring Viral Interactions inLife (Basel, Switzerland) · 2025
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  13. Article
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  15. Article
  16. Article
  17. Molecular Characterization ofMicroorganisms · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yvan ZivanovicInstitut de Biochimie et Biophysique Moléculaire et Cellulaire, Univ. Paris-Sud, UMR CNRS 8619, Orsay, France.
Fabrice Confalonieri
Luc Ponchon
Rudi Lurz
Mohamed Chami
Ali Flayhan
Madalena Renouard
Alexis Huet
Paulette Decottignies
Alan R Davidson
Cécile Breyton
Pascale Boulanger

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophage T5 represents a large family of lytic Siphoviridae infecting Gram-negative bacteria. The low-resolution structure of T5 showed the T=13 geometry of the capsid and the unusual trimeric organization of the tail tube, and the assembly pathway of the capsid was established. Although major structural proteins of T5 have been identified in these studies, most of the genes encoding the morphogenesis proteins remained to be identified. Here, we combine a proteomic analysis of T5 particles with a bioinformatic study and electron microscopic immunolocalization to assign function to the genes encoding the structural proteins, the packaging proteins, and other nonstructural components required for T5 assembly. A head maturation protease that likely accounts for the cleavage of the different capsid proteins is identified. Two other proteins involved in capsid maturation add originality to the T5 capsid assembly mechanism: the single head-to-tail joining protein, which closes the T5 capsid after DNA packaging, and the nicking endonuclease responsible for the single-strand interruptions in the T5 genome. We localize most of the tail proteins that were hitherto uncharacterized and provide a detailed description of the tail tip composition. Our findings highlight novel variations of viral assembly strategies and of virion particle architecture. They further recommend T5 for exploring phage structure and assembly and for deciphering conformational rearrangements that accompany DNA transfer from the capsid to the host cytoplasm.

Indexed as

Amino Acid SequenceBacteriophagesCapsidEscherichia coliMicroscopy, ElectronMolecular Sequence DataSequence AlignmentSiphoviridaeViral ProteinsViral Proteins

Identifiers

PMID24198424
PMCPMC3911642

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.