ReviewBriefings in bioinformatics2014
Applications of alignment-free methods in epigenomics.
Review in Briefings in bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
12 citing papers in PubMed.
- Mathematical Approach to Protein Sequence Comparison Based on Physiochemical Properties.ACS omega · 2022Article
- Interpreting alignment-free sequence comparison: what makes a score a good score?NAR genomics and bioinformatics · 2022Article
- Convolutional Neural Network Applied to SARS-CoV-2 Sequence Classification.Sensors (Basel, Switzerland) · 2022Article
- MIAOME: Human microbiome affect the host epigenome.Computational and structural biotechnology journal · 2022Article
- Classification and specific primer design for accurate detection of SARS-CoV-2 using deep learning.Scientific reports · 2021Article
- CORENup: a combination of convolutional and recurrent deep neural networks for nucleosome positioning identification.BMC bioinformatics · 2020Article
- Data stream dataset of SARS-CoV-2 genome.Data in brief · 2020Article
- A survey and evaluations of histogram-based statistics in alignment-free sequence comparison.Briefings in bioinformatics · 2019Article
- Deep learning architectures for prediction of nucleosome positioning from sequences data.BMC bioinformatics · 2018Article
- Alignment-free sequence comparison: benefits, applications, and tools.Genome biology · 2017Review
- Machine learning for epigenetics and future medical applications.Epigenetics · 2017Review
- Application of discrete Fourier inter-coefficient difference for assessing genetic sequence similarity.EURASIP journal on bioinformatics & systems biology · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Epigenetic mechanisms play an important role in the regulation of cell type-specific gene activities, yet how epigenetic patterns are established and maintained remains poorly understood. Recent studies have supported a role of DNA sequences in recruitment of epigenetic regulators. Alignment-free methods have been applied to identify distinct sequence features that are associated with epigenetic patterns and to predict epigenomic profiles. Here, we review recent advances in such applications, including the methods to map DNA sequence to feature space, sequence comparison and prediction models. Computational studies using these methods have provided important insights into the epigenetic regulatory mechanisms.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.