Evidence map›Paper›PMID 24196483›Full record

ArticleKidney international2014

Subfractionation, characterization, and in-depth proteomic analysis of glomerular membrane vesicles in human urine.

Marie C Hogan, Kenneth L Johnson, Roman M Zenka, M Cristine Charlesworth, Benjamin J Madden, Doug W Mahoney, Ann L Oberg, Bing Q Huang, Alexey A Leontovich, Lisa L Nesbitt and 4 more

Open access · greenAbstract read
In one paragraph

Article in Kidney international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Review
  7. Article
  8. Article
  9. Article
  10. The Life of a Kidney Podocyte.Acta physiologica (Oxford, England) · 2025
    Review
  11. Review
  12. Uromodulin and the study of urinary extracellular vesicles.Journal of extracellular biology · 2024
    Review
  13. Renovascular Disease and Mitochondrial Dysfunction in Human Mesenchymal Stem Cells.Journal of the American Society of Nephrology : JASN · 2024
    Article
  14. Article
  15. Review
  16. Extracellular vesicles as tools and targets in therapy for diseases.Signal transduction and targeted therapy · 2024
    Review
  17. Review
  18. Article
  19. Review
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Marie C HoganDivision of Nephrology and Hypertension, Department of Internal Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Kenneth L JohnsonMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
Roman M ZenkaMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
M Cristine CharlesworthMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
Benjamin J MaddenMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
Doug W Mahoney1] Department of Health Sciences Research, Mayo Clinic, College of Medicine, Rochester, Minnesota, USA [2] Department of Biomedical Statistics and Informatics, Mayo Clinic, College of Medicine, Rochester, Minnesota, USA.
Ann L Oberg1] Department of Health Sciences Research, Mayo Clinic, College of Medicine, Rochester, Minnesota, USA [2] Department of Biomedical Statistics and Informatics, Mayo Clinic, College of Medicine, Rochester, Minnesota, USA.
Bing Q HuangMayo Electron Microscopy Core Laboratory, Mayo Clinic, Rochester, Minnesota, USA.
Alexey A LeontovichDepartment of Biomedical Statistics and Informatics, Mayo Clinic, College of Medicine, Rochester, Minnesota, USA.
Lisa L NesbittDivision of Nephrology and Hypertension, Department of Internal Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Jason L BakebergDivision of Nephrology and Hypertension, Department of Internal Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Daniel J McCormickMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
H Robert BergenMayo Clinic Proteomics Core, Department of Biochemistry and Molecular Biology, Medical Sciences Building, Mayo Clinic, Rochester, Minnesota, USA.
Christopher J WardDivision of Nephrology and Hypertension, Department of Internal Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Mayo Clinic · USMayo Clinic in Arizona · US

Funding

Training Program in Clinical & Translationa Research in Human Glomerular DiseaseU54DK083912 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KRETZLER, MATTHIAS · 2009 to 2023
$20.3M
Pilot and FeasibilityP30DK090728 · NIDDK · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2010 to 2019
$11.8M
Functional analysis of PKD proteins in urinary exosomesR01DK080688 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI WARD, CHRISTOPHER J · 2011 to 2015
$1.4M
Analysis of the proteome of PKD-ELVs in polycystic kidney disease and controlsRC1DK086161 · NIDDK · MAYO CLINIC ROCHESTER · PI HOGAN, MARIE C, WARD, CHRISTOPHER J · 2009 to 2010
$946k
NIDDK NIH HHS 1RC1DK086161-01NIDDK NIH HHS P30 DK090728NIDDK NIH HHS R01 DK080688NIDDK NIH HHS RC1 DK086161NIDDK NIH HHS U-54DK083912NIDDK NIH HHS U54 DK083912PHS HHS 10266762
6 · The paper itself

Abstract

Urinary exosome-like vesicles (ELVs) are a heterogenous mixture (diameter 40-200 nm) containing vesicles shed from all segments of the nephron including glomerular podocytes. Contamination with Tamm-Horsfall protein (THP) oligomers has hampered their isolation and proteomic analysis. Here we improved ELV isolation protocols employing density centrifugation to remove THP and albumin, and isolated a glomerular membranous vesicle (GMV)-enriched subfraction from 7 individuals identifying 1830 proteins and in 3 patients with glomerular disease identifying 5657 unique proteins. The GMV fraction was composed of podocin/podocalyxin-positive irregularly shaped membranous vesicles and podocin/podocalyxin-negative classical exosomes. Ingenuity pathway analysis identified integrin, actin cytoskeleton, and Rho GDI signaling in the top three canonical represented signaling pathways and 19 other proteins associated with inherited glomerular diseases. The GMVs are of podocyte origin and the density gradient technique allowed isolation in a reproducible manner. We show many nephrotic syndrome proteins, proteases, and complement proteins involved in glomerular disease are in GMVs and some were only shed in the disease state (nephrin, TRPC6, INF2 and phospholipase A2 receptor). We calculated sample sizes required to identify new glomerular disease biomarkers, expand the ELV proteome, and provide a reference proteome in a database that may prove useful in the search for biomarkers of glomerular disease.

Indexed as

UrinalysisAdolescentAdultAgedAmino Acid SequenceBiomarkersCase-Control StudiesCentrifugation, Density GradientElectrophoresis, Polyacrylamide GelExosomesFemaleGlomerular Basement MembraneHumansKidney DiseasesMaleMolecular Sequence DataBiomarkers

Identifiers

PMID24196483
PMCPMC4008663
OpenAlexW2072606401

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.