Evidence map›Paper›PMID 24195768›Full record

ArticleMobile DNA2013

A proposed mechanism for IS607-family serine transposases.

Martin R Boocock, Phoebe A Rice

Open access · goldAbstract read
In one paragraph

Article in Mobile DNA, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 50 citations in OpenAlex.

  1. The TIGER/Islander resource for genomic islands.Microbiology resource announcements · 2025
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  9. ISMobile DNA · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. DNA Transposition at Work.Chemical reviews · 2016
    Review
  14. Article
  15. Article
  16. Mechanisms of DNA Transposition.Microbiology spectrum · 2015
    Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Martin R Boocock
Phoebe A RiceDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA. price@uchicago.edu.
University of Chicago · USUniversity of Glasgow · GB

Funding

Mechanisms and regulation of serine resolvasesR01GM086826 · NIGMS · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2009 to 2012
$1.3M
NIGMS NIH HHS R01 GM086826
6 · The paper itself

Abstract

backgroundThe transposases encoded by the IS607 family of mobile elements are unusual serine recombinases with an inverted domain order and minimal specificity for target DNA.

resultsStructural genomics groups have determined three crystal structures of the catalytic domains of IS607 family transposases. The dimers formed by these catalytic domains are very different from those seen for other serine recombinases and include interactions that usually only occur upon formation of a synaptic tetramer.

conclusionsBased on these structures, we propose a model for how IS607-family transposases could form a synaptic tetramer. The model suggests that, unlike other serine recombinases, these enzymes carry out sequence-specific DNA binding and catalysis in trans: the DNA binding and catalytic domains of each subunit are proposed to interact with different DNA duplexes. The model also suggests an explanation for the minimal target DNA specificity.

Identifiers

PMID24195768
PMCPMC4058570
OpenAlexW2115401303

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.