Evidence map›Paper›PMID 24195767›Full record

ArticleBMC genomics2013

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Armelle Darrasse, Sébastien Carrère, Valérie Barbe, Tristan Boureau, Mario L Arrieta-Ortiz, Sophie Bonneau, Martial Briand, Chrystelle Brin, Stéphane Cociancich, Karine Durand and 23 more

Abstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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  6. Whole Genome Sequences of NineMicrobiology resource announcements · 2023
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  11. Complete and Circularized Genome Sequences of 17Microbiology resource announcements · 2021
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  13. Comparative Genomics ofMicroorganisms · 2021
    Article
  14. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
  15. Article
  16. Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  17. Article
  18. Genome analysis and description ofNew microbes and new infections · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

33 authors.

Armelle Darrasse
Sébastien Carrère
Valérie Barbe
Tristan Boureau
Mario L Arrieta-Ortiz
Sophie Bonneau
Martial Briand
Chrystelle Brin
Stéphane Cociancich
Karine Durand
Stéphanie Fouteau
Lionel Gagnevin
Fabien Guérin
Endrick Guy
Arnaud Indiana
Ralf Koebnik
Emmanuelle Lauber
Alejandra Munoz
Laurent D Noël
Isabelle Pieretti
Stéphane Poussier
Olivier Pruvost
Isabelle Robène-Soustrade
Philippe Rott
Monique Royer
Laurana Serres-Giardi
Boris Szurek
Marie-Anne van Sluys
Valérie Verdier
Christian Vernière
Matthieu Arlat
Charles Manceau
Marie-Agnès JacquesINRA, UMR1345 Institut de Recherche en Horticulture et Semences, F-49071, Beaucouzé, France. Marie-Agnes.Jacques@angers.inra.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundXanthomonads are plant-associated bacteria responsible for diseases on economically important crops. Xanthomonas fuscans subsp. fuscans (Xff) is one of the causal agents of common bacterial blight of bean. In this study, the complete genome sequence of strain Xff 4834-R was determined and compared to other Xanthomonas genome sequences.

resultsComparative genomics analyses revealed core characteristics shared between Xff 4834-R and other xanthomonads including chemotaxis elements, two-component systems, TonB-dependent transporters, secretion systems (from T1SS to T6SS) and multiple effectors. For instance a repertoire of 29 Type 3 Effectors (T3Es) with two Transcription Activator-Like Effectors was predicted. Mobile elements were associated with major modifications in the genome structure and gene content in comparison to other Xanthomonas genomes. Notably, a deletion of 33 kbp affects flagellum biosynthesis in Xff 4834-R. The presence of a complete flagellar cluster was assessed in a collection of more than 300 strains representing different species and pathovars of Xanthomonas. Five percent of the tested strains presented a deletion in the flagellar cluster and were non-motile. Moreover, half of the Xff strains isolated from the same epidemic than 4834-R was non-motile and this ratio was conserved in the strains colonizing the next bean seed generations.

conclusionsThis work describes the first genome of a Xanthomonas strain pathogenic on bean and reports the existence of non-motile xanthomonads belonging to different species and pathovars. Isolation of such Xff variants from a natural epidemic may suggest that flagellar motility is not a key function for in planta fitness.

Indexed as

Genetic FitnessBase SequenceEvolution, MolecularFabaceaeFlagellaGenome, BacterialPhylogenyPlant DiseasesSeedsSequence Analysis, DNAXanthomonas

Identifiers

PMID24195767
PMCPMC3826837

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.