Evidence map›Paper›PMID 24194933›Full record

ArticlePloS one2013

Multi-input regulation and logic with T7 promoters in cells and cell-free systems.

Sukanya Iyer, David K Karig, S Elizabeth Norred, Michael L Simpson, Mitchel J Doktycz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Development of a CRISPR/Cas9 genome editing toolbox forSynthetic and systems biotechnology · 2025
    Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Synthetic cells in biomedical applications.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2022
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Cell-Free Synthetic Biology: Engineering Beyond the Cell.Cold Spring Harbor perspectives in biology · 2016
    Review
  15. Article
  16. Article
  17. Review
  18. Developments in the tools and methodologies of synthetic biology.Frontiers in bioengineering and biotechnology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sukanya IyerGraduate Program in Genome Science and Technology, University of Tennessee, Knoxville, Knoxville, Tennessee, United States of America ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America.
David K Karig
S Elizabeth Norred
Michael L Simpson
Mitchel J Doktycz
Oak Ridge National Laboratory · USUniversity of Tennessee at Knoxville · USKnoxville College · US

Funding

Nanosensing and Actuation Using Cell MimeticsR01EB000657 · NIBIB · UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB · PI DOKTYCZ, MITCHEL · 2002 to 2010
$3.3M
NIBIB NIH HHS EB000657NIBIB NIH HHS R01 EB000657
6 · The paper itself

Abstract

Engineered gene circuits offer an opportunity to harness biological systems for biotechnological and biomedical applications. However, reliance on native host promoters for the construction of circuit elements, such as logic gates, can make the implementation of predictable, independently functioning circuits difficult. In contrast, T7 promoters offer a simple orthogonal expression system for use in a variety of cellular backgrounds and even in cell-free systems. Here we develop a T7 promoter system that can be regulated by two different transcriptional repressors for the construction of a logic gate that functions in cells and in cell-free systems. We first present LacI repressible T7lacO promoters that are regulated from a distal lac operator site for repression. We next explore the positioning of a tet operator site within the T7lacO framework to create T7 promoters that respond to tet and lac repressors and realize an IMPLIES gate. Finally, we demonstrate that these dual input sensitive promoters function in an E. coli cell-free protein expression system. Our results expand the utility of T7 promoters in cell based as well as cell-free synthetic biology applications.

Indexed as

Bacteriophage T7Escherichia coliGene Regulatory NetworksGenetic EngineeringPromoter Regions, GeneticRepressor ProteinsSilencer Elements, TranscriptionalSynthetic BiologyRepressor Proteinstetracycline resistance-encoding transposon repressor protein

Identifiers

PMID24194933
PMCPMC3806817
OpenAlexW2041496427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.