ArticleNucleic acids research2014
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.
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52 citing papers in PubMed.
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- Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato.BMC plant biology · 2023Article
- A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors.Plant physiology · 2023Article
- The chloroplast redox-responsive transcriptome of solanaceous plants reveals significant nuclear gene regulatory motifs associated to stress acclimation.Plant molecular biology · 2022Article
- Leaf Apoplast of Field-Grown Potato Analyzed by Quantitative Proteomics and Activity-Based Protein Profiling.International journal of molecular sciences · 2021Article
- Transcriptome Analysis of Potato Infected with the Necrotrophic PathogenPlants (Basel, Switzerland) · 2021Article
- Lipidomic profiling of the developing kernel clarifies the lipid metabolism of Paeonia ostii.Scientific reports · 2021Article
- Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni.BMC genomics · 2021Article
- New Cross-Talks between Pathways Involved in Grapevine Infection with 'Plants (Basel, Switzerland) · 2021Article
- Differential Response of Grapevine to Infection with 'International journal of molecular sciences · 2021Article
- Article
- RNA Sequencing Analyses for Deciphering Potato Molecular Responses.Methods in molecular biology (Clifton, N.J.) · 2021Article
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7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
GoMapMan (http://www.gomapman.org) is an open web-accessible resource for gene functional annotations in the plant sciences. It was developed to facilitate improvement, consolidation and visualization of gene annotations across several plant species. GoMapMan is based on the MapMan ontology, organized in the form of a hierarchical tree of biological concepts, which describe gene functions. Currently, genes of the model species Arabidopsis and three crop species (potato, tomato and rice) are included. The main features of GoMapMan are (i) dynamic and interactive gene product annotation through various curation options; (ii) consolidation of gene annotations for different plant species through the integration of orthologue group information; (iii) traceability of gene ontology changes and annotations; (iv) integration of external knowledge about genes from different public resources; and (v) providing gathered information to high-throughput analysis tools via dynamically generated export files. All of the GoMapMan functionalities are openly available, with the restriction on the curation functions, which require prior registration to ensure traceability of the implemented changes.
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