Evidence map›Paper›PMID 24194560›Full record

ArticleMolecular biology and evolution2014

Rapid creation of forward-genetics tools for C. briggsae using TALENs: lessons for nonmodel organisms.

Qing Wei, Yongquan Shen, Xiangmei Chen, Yelena Shifman, Ronald E Ellis

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. TheiScience · 2025
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  10. Genome editing in the nematodeBiology methods & protocols · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Genome Editing in C. elegans and Other Nematode Species.International journal of molecular sciences · 2016
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Qing WeiGraduate School of the Biomedical Sciences, Rowan University.
Yongquan Shen
Xiangmei Chen
Yelena Shifman
Ronald E Ellis
Rowan University · US

Funding

Evolution of Developmental Regulatory PathwaysR01GM085282 · NIGMS · UNIV OF MED/DENT NJ-SCH OSTEOPATHIC MED · PI ELLIS, RONALD E · 2008 to 2012
$1.5M
NIGMS NIH HHS GM085282NIGMS NIH HHS R01 GM085282
6 · The paper itself

Abstract

Although evolutionary studies of gene function often rely on RNA interference, the ideal approach would use reverse genetics to create null mutations for cross-species comparisons and forward genetics to identify novel genes in each species. We have used transcription activator-like effector nucleases (TALENs) to facilitate both approaches in Caenorhabditis nematodes. First, by combining golden gate cloning and TALEN technology, we can induce frameshifting mutations in any gene. Second, by combining this approach with bioinformatics we can predict and create the resources needed for forward genetic analysis in species like Caenorhabditis briggsae. Although developing genetic model organisms used to require years to isolate marker mutations, balancers, and tools, with TALENs, these reagents can now be produced in months. Furthermore, the analysis of nonsense mutants in related model organisms allows a directed approach for making these markers and tools. When used together, these methods could simplify the adaptation of other organisms for forward and reverse genetics.

Indexed as

AnimalsBase SequenceBiological EvolutionCaenorhabditisCloning, MolecularComputational BiologyEndonucleasesGene Knockout TechniquesMutationSpecies SpecificityTrans-ActivatorsEndonucleasesTrans-ActivatorsC. briggsaeevolutionmodel organismnematodeTALENs

Identifiers

PMID24194560
PMCPMC3907053
OpenAlexW2144853342

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.