Evidence map›Paper›PMID 24194525›Full record

ArticleThe Journal of biological chemistry2013

Catabolite control protein E (CcpE) is a LysR-type transcriptional regulator of tricarboxylic acid cycle activity in Staphylococcus aureus.

Torsten Hartmann, Bo Zhang, Grégory Baronian, Bettina Schulthess, Dagmar Homerova, Stephanie Grubmüller, Erika Kutzner, Rosmarie Gaupp, Ralph Bertram, Robert Powers and 6 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Adaptive Laboratory Evolution ofAntibiotics (Basel, Switzerland) · 2023
    Article
  12. Role of sodium salicylate inFrontiers in microbiology · 2022
    Article
  13. Article
  14. Article
  15. TheFrontiers in microbiology · 2021
    Article
  16. Article
  17. Article
  18. Crosstalk BetweenFrontiers in immunology · 2020
    Review
  19. Virulence and Metabolism.Microbiology spectrum · 2019
    Review
  20. mBio · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Torsten HartmannFrom the Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, 66421 Homburg/Saar, Germany.
Bo Zhang
Grégory Baronian
Bettina Schulthess
Dagmar Homerova
Stephanie Grubmüller
Erika Kutzner
Rosmarie Gaupp
Ralph Bertram
Robert Powers
Wolfgang Eisenreich
Jan Kormanec
Mathias Herrmann
Virginie Molle
Greg A Somerville
Markus Bischoff

Funding

Citric acid cycle regulation of exopolysaccharide synthesis in staphylococciR01AI087668 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI SOMERVILLE, GREG ALAN · 2010 to 2013
$1.4M
NIAID NIH HHS AI087668NIAID NIH HHS R01 AI087668
6 · The paper itself

Abstract

The tricarboxylic acid cycle (TCA cycle) is a central metabolic pathway that provides energy, reducing potential, and biosynthetic intermediates. In Staphylococcus aureus, TCA cycle activity is controlled by several regulators (e.g. CcpA, CodY, and RpiRc) in response to the availability of sugars, amino acids, and environmental stress. Developing a bioinformatic search for additional carbon catabolite-responsive regulators in S. aureus, we identified a LysR-type regulator, catabolite control protein E (CcpE), with homology to the Bacillus subtilis CcpC regulator. Inactivation of ccpE in S. aureus strain Newman revealed that CcpE is a positive transcriptional effector of the first two enzymes of the TCA cycle, aconitase (citB) and to a lesser extent citrate synthase (citZ). Consistent with the transcriptional data, aconitase activity dramatically decreased in the ccpE mutant relative to the wild-type strain. The effect of ccpE inactivation on citB transcription and the lesser effect on citZ transcription were also reflected in electrophoretic mobility shift assays where CcpE bound to the citB promoter but not the citZ promoter. Metabolomic studies showed that inactivation of ccpE resulted in increased intracellular concentrations of acetate, citrate, lactate, and alanine, consistent with a redirection of carbon away from the TCA cycle. Taken together, our data suggest that CcpE is a major direct positive regulator of the TCA cycle gene citB.

Indexed as

Transcription, GeneticAmino Acid SequenceBacterial ProteinsBase SequenceCitric Acid CycleGene DeletionGenetic LociMetabolomeMolecular Sequence DataRepressor ProteinsStaphylococcus aureusTranscription FactorsBacterial Proteinscatabolite control proteins, bacteriaLysR protein, BacteriaRepressor ProteinsTranscription FactorsBacterial MetabolismMetabolic RegulationStaphylococcus aureusTranscription RegulationTricarboxylic Acid (TCA) Cycle

Identifiers

PMID24194525
PMCPMC3861659

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.