Evidence map›Paper›PMID 24192555›Full record

ArticleThe Journal of antibiotics2014

Fluorescent techniques for discovery and characterization of phosphopantetheinyl transferase inhibitors.

Nicolas M Kosa, Timothy L Foley, Michael D Burkart

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of antibiotics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. ACS medicinal chemistry letters · 2023
    Article
  3. In Vitro and In Vivo Inhibition of theJournal of medicinal chemistry · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nicolas M KosaDepartment of Chemistry and Biochemistry, University of California, San Diego (UCSD), La Jolla, CA, USA.
Timothy L FoleyDepartment of Chemistry and Biochemistry, University of California, San Diego (UCSD), La Jolla, CA, USA.
Michael D BurkartDepartment of Chemistry and Biochemistry, University of California, San Diego (UCSD), La Jolla, CA, USA.
National Institutes of Health · US

Funding

NIH Chemical Genomics CenterZIBTR000004 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$52.3M
Protein-Protein Interactions in Natural Product BiosynthesisR01GM095970 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BURKART, MICHAEL D. · 2012 to 2025
$5.9M
OASIS to identify and analyze natural product biosynthesisR01GM094924 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BURKART, MICHAEL D. · 2010 to 2013
$1.2M
Discovery of antitubercular PptT inhibitorsR21AI090213 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BURKART, MICHAEL D. · 2010 to 2011
$407k
NIAID NIH HHS NIH R21AI090213NIAID NIH HHS R21 AI090213NIGMS NIH HHS NIH R01GM094924NIGMS NIH HHS NIH R01 GM095970NIGMS NIH HHS R01 GM094924NIGMS NIH HHS R01 GM095970
6 · The paper itself

Abstract

Phosphopantetheinyl transferase (PPTase; E.C. 2.7.8.-) activates biosynthetic pathways that synthesize both primary and secondary metabolites in bacteria. Inhibitors of these enzymes have the potential to serve as antibiotic compounds that function through a unique mode of action and possess clinical utility. Here we report a direct and continuous assay for this enzyme class based upon monitoring polarization of a fluorescent phosphopantetheine analog as it is transferred from a low-molecular weight CoA substrate to higher-molecular weight protein acceptor. We demonstrate the utility of this method for the biochemical characterization of PPTase Sfp, a canonical representative from this class. We also establish the portability of this technique to other homologs by adapting the assay to function with the human PPTase, a target for which a microplate detection method does not currently exist. Comparison of these targets provides a basis to predict the therapeutic index of inhibitor candidates and offers a valuable characterization of enzyme activity.

Indexed as

Anti-Bacterial AgentsBacteriaBacterial ProteinsDrug DiscoveryEnzyme InhibitorsFluorescence PolarizationHigh-Throughput Screening AssaysHumansMolecular WeightTransferases (Other Substituted Phosphate Groups)Anti-Bacterial AgentsBacterial ProteinsEnzyme Inhibitorsphosphopantetheinyl transferaseTransferases (Other Substituted Phosphate Groups)

Identifiers

PMID24192555
PMCPMC4807864
OpenAlexW1975256622

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.