Evidence map›Paper›PMID 24191263›Full record

ArticleHuman molecular genetics2014

Expression levels of DNA replication and repair genes predict regional somatic repeat instability in the brain but are not altered by polyglutamine disease protein expression or age.

Amanda G Mason, Stephanie Tomé, Jodie P Simard, Randell T Libby, Theodor K Bammler, Richard P Beyer, A Jennifer Morton, Christopher E Pearson, Albert R La Spada

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Emerging drivers of DNA repeat expansions.Biochemical Society transactions · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Replication-independent instability of Friedreich's ataxia GAA repeats during chronological aging.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Repeat expansion diseases.Handbook of clinical neurology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Amanda G MasonDepartment of Pediatrics.
Stephanie Tomé
Jodie P Simard
Randell T Libby
Theodor K Bammler
Richard P Beyer
A Jennifer Morton
Christopher E Pearson
Albert R La Spada
Hospital for Sick Children · CAUniversity of Washington · USPediatrics and Genetics · USSanford Consortium for Regenerative Medicine · USUniversity of Cambridge · GBUniversity of Toronto · CA

Funding

Restoring FMRP Phenotypes Frpm Temporal Regional and Splice- Isoforms VarationsP30HD002274 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 1985 to 2013
$33.6M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
The PPAR-delta pathway in neural function and Huntington's disease neuropathologyR01NS065874 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LA SPADA, ALBERT R · 2010 to 2020
$4.0M
MOLECULAR BASIS OF TRINUCLEOTIDE REPEAT INSTABILITYR01GM059356 · NIGMS · UNIVERSITY OF WASHINGTON · PI LA SPADA, ALBERT R · 1999 to 2010
$3.0M
CIHRNICHD NIH HHS P30-HD02274NIGMS NIH HHS R01 GM059356NIGMS NIH HHS T32 GM008666NIGMS NIH HHS T32 GM008666-14NINDS NIH HHS R01 NS065874
6 · The paper itself

Abstract

Expansion of CAG/CTG trinucleotide repeats causes numerous inherited neurological disorders, including Huntington's disease (HD), several spinocerebellar ataxias and myotonic dystrophy type 1. Expanded repeats are genetically unstable with a propensity to further expand when transmitted from parents to offspring. For many alleles with expanded repeats, extensive somatic mosaicism has been documented. For CAG repeat diseases, dramatic instability has been documented in the striatum, with larger expansions noted with advancing age. In contrast, only modest instability occurs in the cerebellum. Using microarray expression analysis, we sought to identify the genetic basis of these regional instability differences by comparing gene expression in the striatum and cerebellum of aged wild-type C57BL/6J mice. We identified eight candidate genes enriched in cerebellum, and validated four--Pcna, Rpa1, Msh6 and Fen1--along with a highly associated interactor, Lig1. We also explored whether expression levels of mismatch repair (MMR) proteins are altered in a line of HD transgenic mice, R6/2, that is known to show pronounced regional repeat instability. Compared with wild-type littermates, MMR expression levels were not significantly altered in R6/2 mice regardless of age. Interestingly, expression levels of these candidates were significantly increased in the cerebellum of control and HD human samples in comparison to striatum. Together, our data suggest that elevated expression levels of DNA replication and repair proteins in cerebellum may act as a safeguard against repeat instability, and may account for the dramatically reduced somatic instability present in this brain region, compared with the marked instability observed in the striatum.

Indexed as

DNA Mismatch RepairAge FactorsAnimalsCerebellumCorpus StriatumDNA-Binding ProteinsDNA Ligase ATPDNA LigasesFemaleFlap EndonucleasesGene Expression RegulationHumansHuntington DiseaseMaleMiceMice, Inbred C57BLDNA-Binding ProteinsDNA Ligase ATPDNA LigasesFen1 protein, mouseFlap EndonucleasesG-T mismatch-binding proteinLIG1 protein, humanLig1 protein, mouseProliferating Cell Nuclear AntigenReplication Protein ARpa1 protein, mouse

Identifiers

PMID24191263
PMCPMC3929096
OpenAlexW2126254109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.