Evidence map›Paper›PMID 24191060›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Genome rearrangements caused by interstitial telomeric sequences in yeast.

Anna Y Aksenova, Patricia W Greenwell, Margaret Dominska, Alexander A Shishkin, Jane C Kim, Thomas D Petes, Sergei M Mirkin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Interstitial telomeric sequences promote gross chromosomal rearrangement via multiple mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Comparative genomics ofbioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Practical Approaches for the YeastInternational journal of molecular sciences · 2023
    Review
  10. Chromosomal conservatism vs chromosomal megaevolution: enigma of karyotypic evolution in Lepidoptera.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
  11. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  12. Break-induced replication: unraveling each step.Trends in genetics : TIG · 2022
    Review
  13. Article
  14. InterstitialPlants (Basel, Switzerland) · 2021
    Article
  15. Homologous recombination within repetitive DNA.Current opinion in genetics & development · 2021
    Review
  16. Review
  17. Review
  18. Cytogenetically Elusive Sex Chromosomes in Scincoidean Lizards.International journal of molecular sciences · 2021
    Article
  19. Repeat-Driven Generation of Antigenic Diversity in a Major Human Pathogen,Frontiers in cellular and infection microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Anna Y AksenovaDepartment of Biology, Tufts University, Medford, MA 02155.
Patricia W Greenwell
Margaret Dominska
Alexander A Shishkin
Jane C Kim
Thomas D Petes
Sergei M Mirkin
Tufts University · USDuke University · USDuke University Hospital · US

Funding

Mutations Arising During DNA RepairP01GM105473 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 2014 to 2018
$8.6M
Training in Education and Critical Research SkillsK12GM074869 · NIGMS · TUFTS UNIVERSITY BOSTON · PI MOORE, CLAIRE L · 2006 to 2017
$8.5M
RECOMBINATION IN YEASTR01GM024110 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1985 to 2015
$6.1M
INSTABILITY OF SIMPLE REPETITIVE DNA SEQUENCES IN YEASTR01GM052319 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1995 to 2015
$4.9M
REPLICATION OF SIMPLE DNA REPEATSR01GM060987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MIRKIN, SERGEI · 2001 to 2017
$4.9M
NIGMS NIH HHS GM24110NIGMS NIH HHS GM52319NIGMS NIH HHS GM60987NIGMS NIH HHS K12 GM074869NIGMS NIH HHS P01 GM105473NIGMS NIH HHS R01 GM024110NIGMS NIH HHS R01 GM052319NIGMS NIH HHS R01 GM060987
6 · The paper itself

Abstract

Interstitial telomeric sequences (ITSs) are present in many eukaryotic genomes and are linked to genome instabilities and disease in humans. The mechanisms responsible for ITS-mediated genome instability are not understood in molecular detail. Here, we use a model Saccharomyces cerevisiae system to characterize genome instability mediated by yeast telomeric (Ytel) repeats embedded within an intron of a reporter gene inside a yeast chromosome. We observed a very high rate of small insertions and deletions within the repeats. We also found frequent gross chromosome rearrangements, including deletions, duplications, inversions, translocations, and formation of acentric minichromosomes. The inversions are a unique class of chromosome rearrangement involving an interaction between the ITS and the true telomere of the chromosome. Because we previously found that Ytel repeats cause strong replication fork stalling, we suggest that formation of double-stranded DNA breaks within the Ytel sequences might be responsible for these gross chromosome rearrangements.

Indexed as

Chromosome AberrationsBlotting, SouthernChromosome Fragile SitesDNA Breaks, Double-StrandedGenes, ReporterGenomic InstabilityMicroarray AnalysisPolymerase Chain ReactionSaccharomyces cerevisiaeTelomereinterstitial telomerestelomere silencing

Identifiers

PMID24191060
PMCPMC3856781
OpenAlexW2109034263

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.