Evidence map›Paper›PMID 24191058›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

A genetic strategy to identify targets for the development of drugs that prevent bacterial persistence.

Jee-Hyun Kim, Kathryn M O'Brien, Ritu Sharma, Helena I M Boshoff, German Rehren, Sumit Chakraborty, Joshua B Wallach, Mercedes Monteleone, Daniel J Wilson, Courtney C Aldrich and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 142 citations in OpenAlex.

  1. Global proteolysis during starvation governs proteome remodeling and a survival-regrowth trade-off in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Proton pump inhibitor exposure modulates functional and transcriptional responses inFrontiers in cellular and infection microbiology · 2026
    Article
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  12. Phase variation as a major mechanism of adaptation inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  14. Review
  15. iScience · 2023
    Article
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  18. Review
  19. Article
  20. Chemical-genetic interaction mapping links carbon metabolism and cell wall structure to tuberculosis drug efficacy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Jee-Hyun KimDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065.
Kathryn M O'Brien
Ritu Sharma
Helena I M Boshoff
German Rehren
Sumit Chakraborty
Joshua B Wallach
Mercedes Monteleone
Daniel J Wilson
Courtney C Aldrich
Clifton E Barry
Kyu Y Rhee
Sabine Ehrt
Dirk Schnappinger
Cornell University · USNational Institutes of Health · USUniversity of Minnesota · US

Funding

Exploring the metabolism of non-replicating and drug-resistant TBZIAAI000783 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2017
$8.2M
Robust Genetic Switches for MycobacteriaR56AI089911 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SCHNAPPINGER, DIRK · 2011 to 2011
$562k
Intramural NIH HHSNIAID NIH HHS AI089911NIAID NIH HHS R56 AI089911Wellcome Trust
6 · The paper itself

Abstract

Antibacterial drug development suffers from a paucity of targets whose inhibition kills replicating and nonreplicating bacteria. The latter include phenotypically dormant cells, known as persisters, which are tolerant to many antibiotics and often contribute to failure in the treatment of chronic infections. This is nowhere more apparent than in tuberculosis caused by Mycobacterium tuberculosis, a pathogen that tolerates many antibiotics once it ceases to replicate. We developed a strategy to identify proteins that Mycobacterium tuberculosis requires to both grow and persist and whose inhibition has the potential to prevent drug tolerance and persister formation. This strategy is based on a tunable dual-control genetic switch that provides a regulatory range spanning three orders of magnitude, quickly depletes proteins in both replicating and nonreplicating mycobacteria, and exhibits increased robustness to phenotypic reversion. Using this switch, we demonstrated that depletion of the nicotinamide adenine dinucleotide synthetase (NadE) rapidly killed Mycobacterium tuberculosis under conditions of standard growth and nonreplicative persistence induced by oxygen and nutrient limitation as well as during the acute and chronic phases of infection in mice. These findings establish the dual-control switch as a robust tool with which to probe the essentiality of Mycobacterium tuberculosis proteins under different conditions, including those that induce antibiotic tolerance, and NadE as a target with the potential to shorten current tuberculosis chemotherapies.

Indexed as

Amide SynthasesAnimalsCarrier ProteinsDrug DiscoveryDrug ToleranceEscherichia coli ProteinsGene Expression Regulation, EnzymologicGenetic EngineeringLuciferasesMiceMycobacterium tuberculosisTuberculosisAmide SynthasesCarrier ProteinsEscherichia coli ProteinsLuciferasesNAD+ synthasesspB protein, E coli

Identifiers

PMID24191058
PMCPMC3839782
OpenAlexW2014375669

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.