Evidence map›Paper›PMID 24190505›Full record

ArticleGenes, chromosomes & cancer2014

Exomic analysis of myxoid liposarcomas, synovial sarcomas, and osteosarcomas.

Christine G Joseph, Heejung Hwang, Yuchen Jiao, Laura D Wood, Isaac Kinde, Jian Wu, Nils Mandahl, Jinyong Luo, Ralph H Hruban, Luis A Diaz and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Myxoid liposarcoma with nuclear pleomorphism: a clinicopathological and molecular study.Virchows Archiv : an international journal of pathology · 2024
    Article
  9. Identification of mHeliyon · 2023
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. The epigenomics of sarcoma.Nature reviews. Cancer · 2020
    Review
  17. BRAF V600E mutation is a potential therapeutic target for a small subset of synovial sarcoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  18. Review
  19. Article
  20. Absence of H3F3A mutation in a subset of malignant giant cell tumor of bone.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Christine G Joseph *Ludwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Heejung Hwang *Ludwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Yuchen JiaoLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Laura D WoodLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Isaac KindeLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Jian WuLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Nils MandahlDepartment of Clinical Genetics, University and Regional Laboratories, Lund University, SE-22185 Lund, Sweden.
Jinyong LuoMinistry of Educations Key Laboratory of Clinical Diagnostic Medicine, Chongqinq 400046, China.
Ralph H HrubanLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Luis A DiazLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Tong-Chuan HeThe University of Chicago Medical Center, Chicago, IL 60637.
Bert VogelsteinLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Kenneth W KinzlerLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Fredrik MertensDepartment of Clinical Genetics, University and Regional Laboratories, Lund University, SE-22185 Lund, Sweden.
Nickolas PapadopoulosLudwig Center, the Howard Hughes Medical Institutions, and the Departmentof Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Johns Hopkins University · USHoward Hughes Medical Institute · USLund University · SEMinistry of Education of the People's Republic of China · CNUniversity of Chicago Medical Center · US

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007309 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COX, ANDREA L · 1985 to 2019
$43.2M
MOLECULAR GENETIC ANALYSIS OF COLORECTAL CANCERR37CA043460 · NCI · JOHNS HOPKINS UNIVERSITY · PI VOGELSTEIN, BERT · 1997 to 2016
$7.4M
Genes from the FAP LocusR37CA057345 · NCI · JOHNS HOPKINS UNIVERSITY · PI KINZLER, KENNETH W. · 2002 to 2016
$7.4M
Large-Scale Genetic Analyses of Human CancerR01CA121113 · NCI · JOHNS HOPKINS UNIVERSITY · PI ANAGNOSTOU, VALSAMO, VELCULESCU, VICTOR E. · 2006 to 2022
$4.3M
Genone-wide Discovery of Molecular Alterations in Head and Neck CancerRC2DE020957 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI AGRAWAL, NISHANT, SIDRANSKY, DAVID · 2009 to 2010
$2.5M
The temporal epigenomic program of Barrett's neoplastic progressionR01DK087454 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J · 2009 to 2013
$1.8M
Inflammatory Bowel Disease-Associated Malignant TransformationR01CA133012 · NCI · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J · 2009 to 2013
$1.5M
The Role of microRNA Alterations in Barrett's CarcinogenesisR01CA146799 · NCI · JOHNS HOPKINS UNIVERSITY · PI MELTZER, STEPHEN J · 2009 to 2012
$1.3M
GENES FROM THE FAP LOCUSR01CA057345 · NCI · JOHNS HOPKINS UNIVERSITY · PI KINZLER, KENNETH W. · 1992 to 2001
$734k
NCI NIH HHS CA121113NCI NIH HHS CA133012NCI NIH HHS CA146799NCI NIH HHS CA57345NCI NIH HHS P30 CA006973NCI NIH HHS R01 CA057345NCI NIH HHS R01 CA121113NCI NIH HHS R01 CA133012NCI NIH HHS R01 CA146799NCI NIH HHS R37 CA043460NCI NIH HHS R37 CA057345NIDCR NIH HHS RC2 DE020957NIDCR NIH HHS RC2DE020957NIDDK NIH HHS DK087454NIDDK NIH HHS R01 DK087454NIGMS NIH HHS T32 GM007309
6 · The paper itself

Abstract

Bone and soft tissue sarcomas are a group of histologically heterogeneous and relatively uncommon tumors. To explore their genetic origins, we sequenced the exomes of 13 osteosarcomas, eight myxoid liposarcomas (MLPS), and seven synovial sarcomas (SYN). These tumors had few genetic alterations (median of 10.8). Nevertheless, clear examples of driver gene mutations were observed, including canonical mutations in TP53, PIK3CA, SETD2, AKT1, and subclonal mutation in FBXW7. Of particular interest were mutations in H3F3A, encoding the variant histone H3.3. Mutations in this gene have only been previously observed in gliomas. Loss of heterozygosity of exomic regions was extensive in osteosarcomas but rare in SYN and MLPS. These results provide intriguing nucleotide-level information on these relatively uncommon neoplasms and highlight pathways that help explain their pathogenesis.

Indexed as

AdolescentAdultAgedBone NeoplasmsChildExomeHumansLiposarcoma, MyxoidLoss of HeterozygosityMiddle AgedMutationOsteosarcomaSarcomaSarcoma, Synovial

Identifiers

PMID24190505
PMCPMC4007004
OpenAlexW1900190441

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.