Evidence map›Paper›PMID 24188901›Full record

ArticleGene2014

Chromosomal microarray analysis of consecutive individuals with autism spectrum disorders or learning disability presenting for genetic services.

Jennifer L Roberts, Karine Hovanes, Majed Dasouki, Ann M Manzardo, Merlin G Butler

Open access · greenAbstract read
In one paragraph

Article in Gene, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Language impairment and dyslexia genes influence language skills in children with autism spectrum disorders.Autism research : official journal of the International Society for Autism Research · 2015
    Pooled it
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  11. Landscape ofJournal of clinical medicine · 2024
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  14. Insurance denials and diagnostic rates in a pediatric genomic research cohort.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jennifer L RobertsDepartments of Psychiatry, Behavioral Sciences and Pediatrics, The University of Kansas, Medical Center, Kansas City, KS, USA.
Karine HovanesCombiMatrix Diagnostics, Irvine, CA, USA.
Majed DasoukiDepartment of Neurology, The University of Kansas Medical Center, Kansas City, KS, USA; King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
Ann M ManzardoDepartments of Psychiatry, Behavioral Sciences and Pediatrics, The University of Kansas, Medical Center, Kansas City, KS, USA.
Merlin G ButlerDepartments of Psychiatry, Behavioral Sciences and Pediatrics, The University of Kansas, Medical Center, Kansas City, KS, USA. Electronic address: mbutler4@kumc.edu.
University of Kansas Medical Center · USCombiMatrix · US

Funding

Research Design and Analysis Core (RDAC)P30HD002528 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI FOWLER, STEPHEN CLETIUS · 1985 to 2015
$22.1M
NICHD NIH HHS P30 HD002528
6 · The paper itself

Abstract

Chromosomal microarray analysis is now commonly used in clinical practice to identify copy number variants (CNVs) in the human genome. We report our experience with the use of the 105 K and 180K oligonucleotide microarrays in 215 consecutive patients referred with either autism or autism spectrum disorders (ASD) or developmental delay/learning disability for genetic services at the University of Kansas Medical Center during the past 4 years (2009-2012). Of the 215 patients [140 males and 75 females (male/female ratio=1.87); 65 with ASD and 150 with learning disability], abnormal microarray results were seen in 45 individuals (21%) with a total of 49 CNVs. Of these findings, 32 represented a known diagnostic CNV contributing to the clinical presentation and 17 represented non-diagnostic CNVs (variants of unknown significance). Thirteen patients with ASD had a total of 14 CNVs, 6 CNVs recognized as diagnostic and 8 as non-diagnostic. The most common chromosome involved in the ASD group was chromosome 15. For those with a learning disability, 32 patients had a total of 35 CNVs. Twenty-six of the 35 CNVs were classified as a known diagnostic CNV, usually a deletion (n=20). Nine CNVs were classified as an unknown non-diagnostic CNV, usually a duplication (n=8). For the learning disability subgroup, chromosomes 2 and 22 were most involved. Thirteen out of 65 patients (20%) with ASD had a CNV compared with 32 out of 150 patients (21%) with a learning disability. The frequency of chromosomal microarray abnormalities compared by subject group or gender was not statistically different. A higher percentage of individuals with a learning disability had clinical findings of seizures, dysmorphic features and microcephaly, but not statistically significant. While both groups contained more males than females, a significantly higher percentage of males were present in the ASD group.

Indexed as

Chromosome AberrationsGenetic ServicesMicroarray AnalysisAdolescentAdultChildChild Development Disorders, PervasiveChild, PreschoolFemaleHumansInfantLearning DisabilitiesMaleMiddle AgedYoung AdultA2BP1ACADLaCGHACOXLacyl-coA dehydrogenase, long chain geneacyl-coA oxidase-like geneadipocyte-, C1q-, and collagen domain containing geneADIPOQALS2 chromosome region gene 8ALS2CR8analysis of varianceANKRD11ankyrin repeat domain-containing protein 11 geneANOVAarray comparative genomic hybridizationASDataxin 2-binding protein 1 geneautism spectrum disorderAutism spectrum disorders (ASD)BACbacterial artificial chromosomeBCL2L11BCL2-like 11 geneCACNA1Ccalcium channel, voltage dependent, L-type, alpha 1C subunit genecholinergic receptor, neuronal nicotinic, alpha polypeptide 7 geneCHRNA7Chromosomal microarray analysisCNVCOBLcomputed tomographycopy number variantCopy number variant (CNV)cordon-bleu geneCTdeoxyribonucleic acidDevelopmental delaydiscs, large homolog 1 genediscs, large homolog 4 geneDLG1DLG4DNAEEF1B2EEGelectroencephalogrameukaryotic translation elongation factor 1, beta-2 geneFAM117Bfamily with sequence similarity 117, member B geneFAT1FAT tumor suppressor 1 geneF-box only 45 geneFBXO45FISHfluorescence in situ hybridizationfragile X mental retardation, autosomal homolog 2 genefrizzled 5 geneFXR2FZD5galanin receptor 1 geneGALR1GATAD2BGATA zinc finger domain-containing protein 2B geneGDNF-inducible zinc finger protein 1 geneGZF1HAX1HCLS1-associated protein X1 geneHDAChistone deacetylase geneIDH1IL1RAPL1inositol 1,4,5-triphosphate receptor, type 1 geneinterleukin 1 receptor accessory protein-like 1 geneisocitrate dehydrogenase 1 geneITPR1kininogen 1 geneKLF7KNG1kruppel-like factor 7 genelamin A geneLearning disabilitylines homolog geneLINSLMNAMAP2MBPmicrotubule-associated protein 2 genemitochondrial ribosomal protein L19 geneMRPL19myelin basic protein geneMYL1myosin, light peptide 1 geneNADH-ubiquinone oxidoreductase Fe-S protein 1 geneNDUFS1nephrocystin 1 geneneurexin 1 geneneuroligin 2 geneNLGN2NPHP1NRXN1PAK2parathyroid hormone receptor 2 genePARK2parkin geneperipheral myelin protein 22 genephosphatase and tensin homolog genePMP22POLGpolymerase gamma geneprecursor mRNA-processing factor 8 geneprotein-activated kinase 2 genePRPF8PTENPTH2Rribulose 5-phosphate 3-epimerase geneRPESACSsacsin geneSDSH2B1SH2B adaptor protein 1 geneSH3 and multiple ankyrin repeat domains 3 geneSHANK3short stature homeobox geneSHOXSMARCA4STAG2standard deviationstromal antigen 2 genesulfatase-modifying factor 1 geneSUMF1SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A, member genetracking protein particle complex, subunit 2 geneTRAPPC2tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon isoform geneubiquitin-specific protease 6 geneUCSCUniversity of California, Santa CruzUSP6XIAPX-linked inhibitor of apoptosis geneYWHAEzinc finger protein 407 geneZNF407

Identifiers

PMID24188901
PMCPMC4423794
OpenAlexW2006134661

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.