Evidence map›Paper›PMID 24188128›Full record

ArticleBMC medical genomics2013

Vitamin D related genes in lung development and asthma pathogenesis.

Alvin T Kho, Sunita Sharma, Weiliang Qiu, Roger Gaedigk, Barbara Klanderman, Simin Niu, Chris Anderson, James S Leeder, Scott T Weiss, Kelan G Tantisira

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 75 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Maternal and neonatal 25-hydroxyvitamin D concentrations and school-age lung function, asthma and allergy. The Generation R Study.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2019
    Trial
  6. Trial
  7. Review
  8. Article
  9. Article
  10. Review
  11. Update on vitamin D role in severe infections and sepsis.Journal of anesthesia, analgesia and critical care · 2024
    Review
  12. Prenatal vitamin D supplementation mitigates inflammation-related alveolar remodeling in neonatal mice.American journal of physiology. Lung cellular and molecular physiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Vitamin D Deficiency in Development: How Much Is Enough, and How Much Is Too Much?American journal of respiratory cell and molecular biology · 2021
    Article
  20. Vitamin D and COVID-19: An Overview of Recent Evidence.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Alvin T Kho
Sunita Sharma
Weiliang Qiu
Roger Gaedigk
Barbara Klanderman
Simin Niu
Chris Anderson
James S Leeder
Scott T Weiss
Kelan G TantisiraHarvard Medical School, Boston, MA, USA. kelan.tantisira@channing.harvard.edu.
Harvard University · USBrigham and Women's Hospital · USMercy Hospital · USBoston Children's Hospital · USUniversity of Rochester Medical Center · US

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
INTEGRATIVE PHARMACOGENOMICS OF LEUKOTRIENE INHIBITION IN ASTHMAR01HL092197 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2009 to 2013
$3.6M
INTRAUTERINE SMOKE EXPOSURE AND ASTHMA: GENOMIC ORIGINSR01HL097144 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI KOBZIK, LESTER, WEISS, SCOTT T · 2009 to 2013
$2.9M
A Developmental Basis for Chronic Obstructive Lung DiseaseK25HL091124 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI KHO, ALVIN THONG-JUAK · 2008 to 2012
$743k
INTEGRATIVE GENOMICS AND THE FETAL ORIGINS OF IMPAIRED LUNG FUNCTIONK08HL096833 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SHARMA, SUNITA · 2010 to 2013
$547k
CIGARETTE SMOKE IMPACTS FETAL LUNG DNA METHYLATION AND GENE EXPRESSIONR21HL107927 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI DEMEO, DAWN L, TANTISIRA, KELAN G · 2011 to 2012
$491k
NHLBI NIH HHS K08 HL096833NHLBI NIH HHS K25 HL091124NHLBI NIH HHS R01 HL092197NHLBI NIH HHS R01 HL097144NHLBI NIH HHS R21 HL107927NHLBI NIH HHS U01 HL065899
6 · The paper itself

Abstract

backgroundPoor maternal vitamin D intake is a risk factor for subsequent childhood asthma, suggesting that in utero changes related to vitamin D responsive genes might play a crucial role in later disease susceptibility. We hypothesized that vitamin D pathway genes are developmentally active in the fetal lung and that these developmental genes would be associated with asthma susceptibility and regulation in asthma.

methodsVitamin D pathway genes were derived from PubMed and Gene Ontology surveys. Principal component analysis was used to identify characteristic lung development genes.

resultsVitamin D regulated genes were markedly over-represented in normal human (odds ratio OR 2.15, 95% confidence interval CI: 1.69-2.74) and mouse (OR 2.68, 95% CI: 2.12-3.39) developing lung transcriptomes. 38 vitamin D pathway genes were in both developing lung transcriptomes with >63% of genes more highly expressed in the later than earlier stages of development. In immortalized B-cells derived from 95 asthmatics and their unaffected siblings, 12 of the 38 (31.6%) vitamin D pathway lung development genes were significantly differentially expressed (OR 3.00, 95% CI: 1.43-6.21), whereas 11 (29%) genes were significantly differentially expressed in 43 control versus vitamin D treated immortalized B-cells from Childhood Asthma Management Program subjects (OR 2.62, 95% CI: 1.22-5.50). 4 genes, LAMP3, PIP5K1B, SCARB2 and TXNIP were identified in both groups; each displays significant biologic plausibility for a role in asthma.

conclusionsOur findings demonstrate a significant association between early lung development and asthma-related phenotypes for vitamin D pathway genes, supporting a genomic mechanistic basis for the epidemiologic observations relating maternal vitamin D intake and childhood asthma susceptibility.

Indexed as

Computational BiologyAnimalsAsthmaCell LineChildGene Expression ProfilingGenetic Predisposition to DiseaseHumansLungMiceVitamin DVitamin D

Identifiers

PMID24188128
PMCPMC4228235
OpenAlexW1970966716

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.