Evidence map›Paper›PMID 24186950›Full record

ArticleEukaryotic cell2014

Role of the Trypanosoma brucei HEN1 family methyltransferase in small interfering RNA modification.

Huafang Shi, Rebecca L Barnes, Nicholas Carriero, Vanessa D Atayde, Christian Tschudi, Elisabetta Ullu

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. The role of 3' end uridylation in RNA metabolism and cellular physiology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  2. The evolutionary journey of Argonaute proteins.Nature structural & molecular biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Huafang ShiDepartment of Internal Medicine, School of Medicine, Yale University, New Haven, Connecticut, USA.
Rebecca L Barnes
Nicholas Carriero
Vanessa D Atayde
Christian Tschudi
Elisabetta Ullu
Yale University · US

Funding

TRANSCRIPTION AND RNA PROCESSING IN TRYPANOSOMESR01AI028798 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1990 to 2020
$10.9M
RNA CAPPING IN TRYPANOSOMESR01AI043594 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1998 to 2012
$4.5M
SMALL RNAS AND THEIR ROLE IN TRYPANOSOME BIOLOGYR01AI056333 · NIAID · YALE UNIVERSITY · PI ULLU, ELISABETTA · 2003 to 2012
$3.3M
RNA METABOLISM IN TRYPANOSOMESR37AI028798 · NIAID · YALE UNIVERSITY · PI ULLU, ELISABETTA · 2010 to 2013
$2.9M
NIAID NIH HHS AI043594NIAID NIH HHS AI28798NIAID NIH HHS AI56333NIAID NIH HHS R01 AI028798NIAID NIH HHS R01 AI043594NIAID NIH HHS R01 AI056333NIAID NIH HHS R37 AI028798
6 · The paper itself

Abstract

Parasitic protozoa of the flagellate order Kinetoplastida represent one of the deepest branches of the eukaryotic tree. Among this group of organisms, the mechanism of RNA interference (RNAi) has been investigated in Trypanosoma brucei and to a lesser degree in Leishmania (Viannia) spp. The pathway is triggered by long double-stranded RNA (dsRNA) and in T. brucei requires a set of five core genes, including a single Argonaute (AGO) protein, T. brucei AGO1 (TbAGO1). The five genes are conserved in Leishmania (Viannia) spp. but are absent in other major kinetoplastid species, such as Trypanosoma cruzi and Leishmania major. In T. brucei small interfering RNAs (siRNAs) are methylated at the 3' end, whereas Leishmania (Viannia) sp. siRNAs are not. Here we report that T. brucei HEN1, an ortholog of the metazoan HEN1 2'-O-methyltransferases, is required for methylation of siRNAs. Loss of TbHEN1 causes a reduction in the length of siRNAs. The shorter siRNAs in hen1(-/-) parasites are single stranded and associated with TbAGO1, and a subset carry a nontemplated uridine at the 3' end. These findings support a model wherein TbHEN1 methylates siRNA 3' ends after they are loaded into TbAGO1 and this methylation protects siRNAs from uridylation and 3' trimming. Moreover, expression of TbHEN1 in Leishmania (Viannia) panamensis did not result in siRNA 3' end methylation, further emphasizing mechanistic differences in the trypanosome and Leishmania RNAi mechanisms.

Indexed as

RNA Processing, Post-TranscriptionalAmino Acid SequenceLeishmaniaMethyltransferasesMolecular Sequence DataMutationProtozoan ProteinsRNA, ProtozoanRNA, Small InterferingTrypanosoma brucei bruceiMethyltransferasesProtozoan ProteinsRNA, ProtozoanRNA, Small Interfering

Identifiers

PMID24186950
PMCPMC3910962
OpenAlexW2033808696

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.