ArticleMolecular biology reports2014
Analysis of Brassica napus ESTs: gene discovery and expression patterns of AP2/ERF-family transcription factors.
Article in Molecular biology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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10 citing papers in PubMed, 21 citations in OpenAlex.
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- Functional analysis of PagERF021 gene in salt stress tolerance in Populus alba × P. glandulosa.The plant genome · 2024Article
- Omics: The way forward to enhance abiotic stress tolerance inGM crops & food · 2021Review
- In silico mining and functional analysis of AP2/ERF gene in Withania somnifera.Scientific reports · 2020Article
- Genome-wide exploration and characterization of miR172/euAP2 genes in Brassica napus L. for likely role in flower organ development.BMC plant biology · 2019Article
- Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L.BMC plant biology · 2018Article
- Transcriptome-Wide Identification, Classification, and Characterization ofFrontiers in plant science · 2017Article
- Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.).Molecular genetics and genomics : MGG · 2016Article
- Article
- Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Starting from expressed sequence tag sequences and using the conserved amino acid sequence of the Arabidopsis thaliana AP2/ERF domain as a probe, we used in silico cloning to identify 87 genes that encode putative AP2/ERF transcription factors (TFs) from the Brassica napus. Almost all of the putative AP2/ERF factors from B. napus were similar to genes previously defined as AP2/ERF genes from A. thaliana. Based on the number of AP2-domains and the function of the genes, the AP2/ERF TFs from B. napus were classified into four subfamilies, named the AP2, DREB, ERF, and RAV subfamilies. We then predicted and analyzed cDNA sequences and amino acid sequences, amino acid compositions, physical and chemical characteristics, phylogenetic trees, conserved domain sequences, functional domains, molecular models, and folding states of the proteins they are predicted to encode. Expression analysis showed that four factors, which belonged to the ERF and DREB subfamilies, were induced by abiotic stresses, as well as by hormone treatment. This suggests that those AP2/ERF factors may be involved in signaling pathways responsive to abiotic and biotic stresses. The results from this study, reported herein, form a basis for future functional analyses of B. napus TFs that belong to the AP2/ERF family.
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