ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik1994
Survey of plant short tandem DNA repeats.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.
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Who cites it
73 citing papers in PubMed, 513 citations in OpenAlex.
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- Comparative genomic study on the complete plastomes of four officinal Ardisia species in China.Scientific reports · 2021Article
- Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions.BMC genomics · 2021Article
- Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species.Scientific reports · 2020Article
- Defects in the GINS complex increase the instability of repetitive sequences via a recombination-dependent mechanism.PLoS genetics · 2019Article
- In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms.Bioinformatics and biology insights · 2017Article
- Molecular Resources from Transcriptomes in the Brassicaceae Family.Frontiers in plant science · 2017Article
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- Utilization of in silico EST-SSR markers for diversity studies in castor (Physiology and molecular biology of plants : an international journal of functional plant biology · 2016Article
- Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis.BMC genomics · 2016Article
- Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants.BMC genomics · 2015Article
- MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.Genetica · 2015Article
- An empirical review: Characteristics of plant microsatellite markers that confer higher levels of genetic variation.Applications in plant sciences · 2015Article
- Functional marker development of miR1511-InDel and allelic diversity within the genus Glycine.BMC genomics · 2015Article
- Development of maizeSNP3072, a high-throughput compatible SNP array, for DNA fingerprinting identification of Chinese maize varieties.Molecular breeding : new strategies in plant improvement · 2015Article
- Development of chloroplast simple sequence repeats (cpSSRs) for the intraspecific study of Gracilaria tenuistipitata (Gracilariales, Rhodophyta) from different populations.BMC research notes · 2014Article
- Development and characterization of microsatellite markers for Morus spp. and assessment of their transferability to other closely related species.BMC plant biology · 2013Article
- Polymorphism of the simple sequence repeat (AAC)5 in the nucleolar chromosomes of Old Portuguese wheat cultivars.Journal of genetics · 2013Article
- A review of microsatellite markers and their applications in rice breeding programs to improve blast disease resistance.International journal of molecular sciences · 2013Review
13 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Length variations in simple sequence tandem repeats are being given increased attention in plant genetics. Some short tandem repeats (STRs) from a few plant species, mainly those at the dinucleotide level, have been demonstrated to show polymorphisms and Mendelian inheritance. In the study reported here a search for all of the possible STRs ranging from mononucleotide up to tetranucleotide repeats was carried out on EMBL and GenBank DNA sequence databases of 3026 kb nuclear DNA and 1268 kb organelle DNA in 54 and 28 plant species (plus algae), respectively. An extreme rareness of STRs (4 STRs in 1268 kb DNA) was detected in organelle compared with nuclear DNA sequences. In nuclear DNA sequences, (AT)n sequences were the most abundant followed by (A)n · (T)n, (AG)n · (CT)n, (AAT)n · (ATT)n, (AAC)n · (GTT), (AGC)n · (GCT)n, (AAG)n · (CTT)n, (AATT)n · (TTAA)n, (AAAT)n · (ATTT)n and (AC)n · (GT)n sequences. A total of 130 STRs were found, including 49 (AT)n sequences in 31 species, giving an average of 1 STR every 23.3 kb and 1 (AT)n STR every 62 kb. An abundance comparable to that for the dinucleotide repeat was observed for the tri- and tetranucleotide repeats together. On average, there was 1 STR every 64.6 kb DNA in monocotyledons versus 1 every 21.2 kb DNA in dicotyledons. The fraction of STRs that contained G-C basepairs increased as the G+C contents went up from dicotyledons, monocotyledons to algae. While STRs of mono-, di- and tetranucleotide repeats were all located in non coding regions, 57% of the trinucleotide STRs containing G-C basepairs resided in coding regions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.