Evidence map›Paper›PMID 24185511›Full record

ArticleNature genetics2013

Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.

Joshua M Francis, Adam Kiezun, Alex H Ramos, Stefano Serra, Chandra Sekhar Pedamallu, Zhi Rong Qian, Michaela S Banck, Rahul Kanwar, Amit A Kulkarni, Anna Karpathakis and 37 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02973204 (Circulating Tumor Cells and Tumor DNA in HCC and NET - Patient-specific Biomarkers for Clinical Decision Support and Tailored Relapse Diagnostics), which is not on this map. Cited by 180 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
180citing papers in PubMed, 1 pooled it
17.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02973204 completednot on this mapstarted 2016, after this paper: background citation

Circulating Tumor Cells and Tumor DNA in HCC and NET - Patient-specific Biomarkers for Clinical Decision Support and Tailored Relapse Diagnostics

Typeobservational_patient_registrySponsorUniversity of AarhusRan2016 to 2020Enrolled167ConditionsCarcinoma, Hepatocellular, Neuroendocrine TumorsArmsSorafenib, Radiofrequency ablation (RFA) or surgery, Everolimus, Lanreotide
3 · Its place in the literature

Who cites it

180 citing papers in PubMed, 1 synthesis or guideline pooled it, 368 citations in OpenAlex.

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120 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 8 institutions in 3 countries.

Joshua M Francis1] Broad Institute, Cambridge, Massachusetts, USA. [2] Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [3].
Adam Kiezun
Alex H Ramos
Stefano Serra
Chandra Sekhar Pedamallu
Zhi Rong Qian
Michaela S Banck
Rahul Kanwar
Amit A Kulkarni
Anna Karpathakis
Veronica Manzo
Tanupriya Contractor
Juliet Philips
Elizabeth Nickerson
Nam Pho
Susanne M Hooshmand
Lauren K Brais
Michael S Lawrence
Trevor Pugh
Aaron McKenna
Andrey Sivachenko
Kristian Cibulskis
Scott L Carter
Akinyemi I Ojesina
Samuel Freeman
Robert T Jones
Douglas Voet
Gordon Saksena
Daniel Auclair
Robert Onofrio
Erica Shefler
Carrie Sougnez
Jonna Grimsby
Lisa Green
Niall Lennon
Tim Meyer
Martyn Caplin
Daniel C Chung
Andreas S Beutler
Shuji Ogino
Christina Thirlwell
Ramesh Shivdasani
Sylvia L Asa
Chris R Harris
Gad Getz
Matthew Kulke
Matthew Meyerson
Broad Institute · USDana-Farber Cancer Institute · USLondon Cancer · GBMayo Clinic · USUniversity College London · GBUniversity Health Network · CAWinnMed · USMassachusetts General Hospital · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
Cancer Research UK 12183NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA127003
6 · The paper itself

Abstract

The diagnosed incidence of small intestine neuroendocrine tumors (SI-NETs) is increasing, and the underlying genomic mechanisms have not yet been defined. Using exome- and genome-sequence analysis of SI-NETs, we identified recurrent somatic mutations and deletions in CDKN1B, the cyclin-dependent kinase inhibitor gene, which encodes p27. We observed frameshift mutations of CDKN1B in 14 of 180 SI-NETs, and we detected hemizygous deletions encompassing CDKN1B in 7 out of 50 SI-NETs, nominating p27 as a tumor suppressor and implicating cell cycle dysregulation in the etiology of SI-NETs.

Indexed as

MutationCell CycleCohort StudiesCyclin-Dependent Kinase Inhibitor p27Genes, Tumor SuppressorGenetic Predisposition to DiseaseHumansIntestinal NeoplasmsIntestine, SmallNeuroendocrine TumorsSequence Analysis, DNACDKN1B protein, humanCyclin-Dependent Kinase Inhibitor p27

Identifiers

PMID24185511
PMCPMC4239432
OpenAlexW1991912136

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.