Evidence map›Paper›PMID 24185138›Full record

ArticleJournal of proteomics2014

Discovery of sialyl Lewis A and Lewis X modified protein cancer biomarkers using high density antibody arrays.

Jung-hyun Rho, Judson R Mead, W Shea Wright, Dean E Brenner, James W Stave, Jeffrey C Gildersleeve, Paul D Lampe

Abstract read
In one paragraph

Article in Journal of proteomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 58 citations in OpenAlex.

  1. Adhesion to aggression: unravelling sLeClinical & experimental metastasis · 2025
    Review
  2. Article
  3. Mass spectrometry analysis of intact proteinJournal of Zhejiang University. Science. B · 2024
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Tumor-derived Autoantibodies Identify Malignant Pulmonary Nodules.American journal of respiratory and critical care medicine · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Jung-hyun RhoTranslational Research Program, Human Biology and Public Health Sciences Divisions, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
Judson R MeadTranslational Research Program, Human Biology and Public Health Sciences Divisions, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA.
W Shea WrightChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute-Frederick, Frederick, MD 21702, USA.
Dean E BrennerGreat Lakes New England (GLNE) Clinical Validation Center of EDRN, University of Michigan Medical Center, Ann Arbor, MI 48109, USA; VA Medical Center, Ann Arbor, MI 48105, USA.
James W StaveSDIX, LLC., Newark, DE 19702, USA.
Jeffrey C GildersleeveChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute-Frederick, Frederick, MD 21702, USA.
Paul D LampeTranslational Research Program, Human Biology and Public Health Sciences Divisions, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA. Electronic address: plampe@fhcrc.org.
Fred Hutch Cancer Center · USCenter for Cancer Research · USNational Cancer Institute · USUniversity of Michigan–Ann Arbor · US

Funding

Great Lakes/New England Clinical Validation CenterU01CA086400 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RICCIARDIELLO, LUIGI, SYNGAL, SAPNA · 2000 to 2025
$26.0M
Translational Research in GI CancerP50CA130810 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BRENNER, DEAN E. · 2010 to 2016
$11.8M
Carbohydrate Microarray Profiling of Glycan-Binding Antibodies and LectinsZIABC010740 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GILDERSLEEVE, JEFFREY · 2009 to 2025
$10.7M
Affinity Based Strategies to Fast Track Development of Colon Cancer BiomarkersU01CA152746 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HANASH, SAMIR M, LAMPE, PAUL D. · 2010 to 2014
$3.1M
NCI NIH HHS P50 CA130810NCI NIH HHS U01 CA086400NCI NIH HHS U01CA086400NCI NIH HHS U01 CA152746
6 · The paper itself

Abstract

We report on a high-dimensional method to globally profile glycoproteins that are modified with sialyl Lewis A or Lewis X glycans. Specifically, glycoproteins in serum or plasma are fractionated on a high-density antibody microarray (i.e., each are localized to their specific antibody spot) and are specifically detected via fluorescently labeled anti-sialyl Lewis A or anti-Lewis X antibodies with quantification in a microarray scanner. Non-glycosylated proteins or glycoproteins with other glycan motifs do not interfere with this assay. The whole process is very rapid and applicable for high-throughput screening without the need for purification of glycoproteins from the samples. Using these methods, sialyl Lewis A or Lewis X moieties were found to be expressed on many previously unreported secreted or membrane associated proteins. Furthermore, the combination of sialyl Lewis A or Lewis X content with protein level increased the ability of certain glycoproteins to distinguish 30 patients with stage III and IV colon cancer from 60 control samples. Thus, this highly sensitive method is capable of discovering novel specific glycan modifications on proteins, many of which will likely be useful for disease detection and monitoring. BIOLOGICAL SIGNIFICANCE: In this paper, we show that we can detect cancer-specific glycan modifications on thousands of proteins using a high-density antibody array paired with a glycan specific antibody to probe the bound glycoproteins. To our knowledge, our array is by far the largest and densest that has ever been used for global profiling of specific glycan modification on proteins. Analysis of colon cancer patient plasma for sialyl Lewis A and Lewis X modifications revealed previously unknown protein carriers of these modifications and significant increases in these specific glycans on some proteins in people with cancer versus healthy controls, suggesting this method could be used to discover novel biomarkers.

Indexed as

Protein Array AnalysisAntibodies, NeoplasmBiomarkers, TumorColonic NeoplasmsGlycoproteinsGlycosylationHumansLewis Blood Group AntigensNeoplasm ProteinsOligosaccharidesAntibodies, NeoplasmBiomarkers, TumorGlycoproteinsLewis a oligosaccharideLewis Blood Group AntigensNeoplasm ProteinsOligosaccharidesAntibody arrayCancer biomarkerGlycansGlycoproteinsLewis XSialyl Lewis A

Identifiers

PMID24185138
PMCPMC3946870
OpenAlexW2065204894

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.