Evidence map›Paper›PMID 24185007›Full record

ArticleNature2013

A melanocyte lineage program confers resistance to MAP kinase pathway inhibition.

Cory M Johannessen, Laura A Johnson, Federica Piccioni, Aisha Townes, Dennie T Frederick, Melanie K Donahue, Rajiv Narayan, Keith T Flaherty, Jennifer A Wargo, David E Root and 1 more

Expression of concernOpen access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 290 papers.

0numbers the graph read from it
0cells of the map it votes in
290citing papers in PubMed
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

290 citing papers in PubMed, 452 citations in OpenAlex.

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  8. TargetingJournal of Zhejiang University. Science. B · 2026
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230 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Cory M Johannessen1] The Broad Institute of Harvard University and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA [2] Department of Medical Oncology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA [3] Harvard Medical School, 25 Shattuck Street, Boston, Massachusetts 02115, USA.
Laura A Johnson
Federica Piccioni
Aisha Townes
Dennie T Frederick
Melanie K Donahue
Rajiv Narayan
Keith T Flaherty
Jennifer A Wargo
David E Root
Levi A Garraway
Massachusetts Institute of Technology · USMassachusetts General Hospital · USBroad Institute · USHarvard University · USLemuel Shattuck Hospital · USTufts University · US

Funding

Targeting Raf in Melanoma: Mechanisms for Effect & Resistance & Opportunities forP50CA093683 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI MIER, JAMES W · 2001 to 2012
$25.8M
Transcriptional mechanisms and melanomaP01CA163222 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI Kai W Wucherpfennig · 2013 to 2026
$25.3M
Large scale gene expression analysis of cellular statesU54HG006093 · NHGRI · BROAD INSTITUTE, INC. · PI GOLUB, TODD R., SUBRAMANIAN, ARAVIND · 2010 to 2013
$9.1M
The Use of Whole-Exome Sequencing to Guide the Care of Cancer PatientsU01HG006492 · NHGRI · DANA-FARBER CANCER INST · PI JANNE, PASI A, VAN ALLEN, ELIEZER M · 2012 to 2016
$7.3M
Defining Melanoma Therapeutic Avenues by Integrative Functional GenomicsDP2OD002750 · OD · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI ALEXANDER · 2007 to 2007
$2.6M
High-Throughput Tumor Genomic Profiling by Massively Parallel SequencingR33CA155554 · NCI · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI A., MACCONAILL, LAURA E · 2011 to 2013
$717k
NCI NIH HHS P01 CA163222NCI NIH HHS P50 CA093683NCI NIH HHS P50CA93683NCI NIH HHS R33 CA155554NHGRI NIH HHS U01 HG006492NHGRI NIH HHS U54 HG006093NIH HHS DP2 OD002750NIH HHS DP2OD002750
6 · The paper itself

Abstract

Malignant melanomas harbouring point mutations (Val600Glu) in the serine/threonine-protein kinase BRAF (BRAF(V600E)) depend on RAF-MEK-ERK signalling for tumour cell growth. RAF and MEK inhibitors show remarkable clinical efficacy in BRAF(V600E) melanoma; however, resistance to these agents remains a formidable challenge. Global characterization of resistance mechanisms may inform the development of more effective therapeutic combinations. Here we carried out systematic gain-of-function resistance studies by expressing more than 15,500 genes individually in a BRAF(V600E) melanoma cell line treated with RAF, MEK, ERK or combined RAF-MEK inhibitors. These studies revealed a cyclic-AMP-dependent melanocytic signalling network not previously associated with drug resistance, including G-protein-coupled receptors, adenyl cyclase, protein kinase A and cAMP response element binding protein (CREB). Preliminary analysis of biopsies from BRAF(V600E) melanoma patients revealed that phosphorylated (active) CREB was suppressed by RAF-MEK inhibition but restored in relapsing tumours. Expression of transcription factors activated downstream of MAP kinase and cAMP pathways also conferred resistance, including c-FOS, NR4A1, NR4A2 and MITF. Combined treatment with MAPK-pathway and histone-deacetylase inhibitors suppressed MITF expression and cAMP-mediated resistance. Collectively, these data suggest that oncogenic dysregulation of a melanocyte lineage dependency can cause resistance to RAF-MEK-ERK inhibition, which may be overcome by combining signalling- and chromatin-directed therapeutics.

Indexed as

Antineoplastic AgentsCell LineageCell Line, TumorCREB-Binding ProteinCyclic AMPDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticHEK293 CellsHumansMelanocytesMelanomaMitogen-Activated Protein KinasesProtein Kinase InhibitorsSignal TransductionTranscription FactorsAntineoplastic AgentsCREB-Binding ProteinCyclic AMPMitogen-Activated Protein KinasesProtein Kinase InhibitorsTranscription Factors

Identifiers

PMID24185007
PMCPMC4098832
OpenAlexW2159220884

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.