ArticleAntioxidants & redox signaling2014
Specificity in ROS signaling and transcript signatures.
Article in Antioxidants & redox signaling, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed, 185 citations in OpenAlex.
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- Decoding plant defense signaling using the defenseless mutant.The New phytologist · 2026Article
- The RALF-FERONIA Signaling Axis: A Central Hub Integrating Plant Growth, Reproduction, and Stress Responses.International journal of molecular sciences · 2025Review
- Root Exudates Mediate the Production of Reactive Oxygen Species in Rhizosphere Soil: Formation Mechanisms and Ecological Effects.Plants (Basel, Switzerland) · 2025Review
- Reactive oxygen species-post translational modifications-central carbon metabolism regulatory loop: coordination of redox homeostasis and carbon flux allocation in plants under abiotic stress.Frontiers in plant science · 2025Review
- Metabolomic analyses reveal that graphene oxide alleviates nicosulfuron toxicity in sweet corn.Frontiers in plant science · 2025Article
- Physiological, anatomical, and molecular responses of glanded and glandless cotton to chromium exposure.Frontiers in plant science · 2025Article
- Priming grapevines with oregano essential oil vapour results in a metabolomic shift eliciting resistance against downy mildew.BMC plant biology · 2024Article
- ROS, an Important Plant Growth Regulator in Root Growth and Development: Functional Genes and Mechanism.Biology · 2024Review
- ROS as Signaling Molecules to Initiate the Process of Plant Acclimatization to Abiotic Stress.International journal of molecular sciences · 2024Review
- Monascus pigment prevent the oxidative cytotoxicity in myotube derived hydrogen peroxide.Journal of clinical biochemistry and nutrition · 2024Article
- Transcriptome analysis reveals the effect of propyl gallate on kiwifruit callus formation.Plant cell reports · 2024Article
- OsUGE2 Regulates Plant Growth through Affecting ROS Homeostasis and Iron Level in Rice.Rice (New York, N.Y.) · 2024Article
- Amphibian skin bacteria display antifungal activity and induce plant defense mechanisms againstFrontiers in plant science · 2024Article
- A mitochondrial pentatricopeptide repeat protein enhances cold tolerance by modulating mitochondrial superoxide in rice.Nature communications · 2023Article
- Reactive oxygen species- and nitric oxide-dependent regulation of ion and metal homeostasis in plants.Journal of experimental botany · 2023Article
- Role of bZIP Transcription Factors in Plant Salt Stress.International journal of molecular sciences · 2023Review
- Article
- Stomatal Responses of Two Drought-Tolerant Barley Varieties with Different ROS Regulation Strategies under Drought Conditions.Antioxidants (Basel, Switzerland) · 2023Article
- Levels of oxidative stress in patients with neoadjuvant chemotherapy for gastric cancer: correlation with treatment response.Frontiers in oncology · 2023Article
6 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
significanceReactive oxygen species (ROS), important signaling molecules in plants, are involved in developmental control and stress adaptation. ROS production can trigger broad transcriptional changes; however, it is not clear how specificity in transcriptional regulation is achieved. RECENT ADVANCES: A large collection of public transcriptome data from the model plant Arabidopsis thaliana is available for analysis. These data can be used for the analysis of biological processes that are associated with ROS signaling and for the identification of suitable transcriptional indicators. Several online tools, such as Genevestigator and Expression Angler, have simplified the task to analyze, interpret, and visualize this wealth of data. CRITICAL ISSUES: The analysis of the exact transcriptional responses to ROS requires the production of specific ROS in distinct subcellular compartments with precise timing, which is experimentally difficult. Analyses are further complicated by the effect of ROS production in one subcellular location on the ROS accumulation in other compartments. In addition, even subtle differences in the method of ROS production or treatment can lead to significantly different outcomes when various stimuli are compared. FUTURE DIRECTIONS: Due to the difficulty of inducing ROS production specifically with regard to ROS type, subcellular localization, and timing, we propose that the concept of a "ROS marker gene" should be re-evaluated. We suggest guidelines for the analysis of transcriptional data in ROS signaling. The use of "ROS signatures," which consist of a set of genes that together can show characteristic and indicative responses, should be preferred over the use of individual marker genes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.