Evidence map›Paper›PMID 24175970›Full record

ArticleBMC biotechnology2013

The capability of endophytic fungi for production of hemicellulases and related enzymes.

Diogo Robl, Priscila da Silva Delabona, Carla Montanari Mergel, Juan Diego Rojas, Patrícia Dos Santos Costa, Ida Chapaval Pimentel, Vania Aparecida Vicente, José Geraldo da Cruz Pradella, Gabriel Padilla

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 136 citations in OpenAlex.

  1. Review
  2. Metabarcode insights into the airborne fungal diversity in the indoor and outdoor environments in archives from Yunnan, Southwestern China.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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  3. Diversity of fungal endophytes from mangrove plants of Santa Catarina Island, Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  4. Enzymatic potential of endophytic fungi: xylanase production by Colletotrichum boninense from sugarcane biomass.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
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  7. Biotechnology reports (Amsterdam, Netherlands) · 2022
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  17. Purification and immobilization of laccase fromJournal, genetic engineering & biotechnology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Diogo Robl
Priscila da Silva Delabona
Carla Montanari Mergel
Juan Diego Rojas
Patrícia Dos Santos Costa
Ida Chapaval Pimentel
Vania Aparecida Vicente
José Geraldo da Cruz Pradella
Gabriel PadillaInstitute of Biomedical Sciences, University of São Paulo (USP), Avenida Lineu Prestes 1374 CEP, 05508-900 São Paulo SP, Brazil. gpadilla@icb.usp.br.
Universidade de São Paulo · BRBrazilian Center for Research in Energy and Materials · BRUniversidade Federal do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is an imperative necessity for alternative sources of energy able to reduce the world dependence of fossil oil. One of the most successful options is ethanol obtained mainly from sugarcane and corn fermentation. The foremost residue from sugarcane industry is the bagasse, a rich lignocellulosic raw material uses for the production of ethanol second generation (2G). New cellulolytic and hemicellulytic enzymes are needed, in order to optimize the degradation of bagasse and production of ethanol 2G.

resultsThe ability to produce hemicellulases and related enzymes, suitable for lignocellulosic biomass deconstruction, was explored using 110 endophytic fungi and 9 fungi isolated from spoiled books in Brazil. Two initial selections were performed, one employing the esculin gel diffusion assay, and the other by culturing on agar plate media with beechwood xylan and liquor from the hydrothermal pretreatment of sugar cane bagasse. A total of 56 isolates were then grown at 29°C on steam-exploded delignified sugar cane bagasse (DEB) plus soybean bran (SB) (3:1), with measurement of the xylanase, pectinase, β-glucosidase, CMCase, and FPase activities. Twelve strains were selected, and their enzyme extracts were assessed using different substrates. Finally, the best six strains were grown under xylan and pectin, and several glycohydrolases activities were also assessed. These strains were identified morphologically and by sequencing the internal transcribed spacer (ITS) regions and the partial β-tubulin gene (BT2). The best six strains were identified as Aspergillus niger DR02, Trichoderma atroviride DR17 and DR19, Alternaria sp. DR45, Annulohypoxylon stigyum DR47 and Talaromyces wortmannii DR49. These strains produced glycohydrolases with different profiles, and production was highly influenced by the carbon sources in the media.

conclusionsThe selected endophytic fungi Aspergillus niger DR02, Trichoderma atroviride DR17 and DR19, Alternaria sp. DR45, Annulohypoxylon stigyum DR47 and Talaromyces wortmannii DR49 are excellent producers of hydrolytic enzymes to be used as part of blends to decompose sugarcane biomass at industrial level.

Indexed as

AlternariaAspergillus nigerbeta-GlucosidaseCellulaseCellulasesCelluloseDNA, FungalEthanolFermentationGlycoside HydrolasesHydrolysisSaccharumSequence Analysis, DNATalaromycesTrichodermaWaste Productsbagassebeta-GlucosidasecarboxymethylcellulaseCellulaseCellulasesCelluloseDNA, FungalEthanolGlycoside HydrolaseshemicellulaseWaste Products

Identifiers

PMID24175970
PMCPMC3840621
OpenAlexW1985861118

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.