Evidence map›Paper›PMID 24174619›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2013

Substrate-induced protein stabilization reveals a predominant contribution from mature proteins to peptides presented on MHC class I.

Jeff D Colbert, Diego J Farfán-Arribas, Kenneth L Rock

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Kinetically distinct processing pathways diversify the CD8Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. When few survive to tell the tale: thymus and gonad as auditioning organs: historical overview.Theory in biosciences = Theorie in den Biowissenschaften · 2020
    Review
  4. Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Connexins and pannexins in the immune system and lymphatic organs.Cellular and molecular life sciences : CMLS · 2015
    Review
  10. Review
  11. The nature and extent of contributions by defective ribosome products to the HLA peptidome.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Review
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jeff D ColbertDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01605.
Diego J Farfán-Arribas
Kenneth L Rock
University of Massachusetts Chan Medical School · US

Funding

PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
IMMUNOBIOLOGY OF MHC RESTRICTION OF T CELLSR37AI020248 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ROCK, KENNETH L · 1998 to 2008
$2.4M
IMMUNOLOGY OF MHC RESTRICTION OF T CELLSR01AI020248 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ROCK, KENNETH L · 1985 to 2013
$2.0M
VIRUS INFECTIONS: PATHOGENESIS &HOST IMMUNE RESPONSEST32AI007272 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FINBERG, ROBERT WILLIAM · 1985 to 2009
$1.9M
NIAID NIH HHS AI007272-25NIAID NIH HHS AI20248NIAID NIH HHS R01 AI020248NIAID NIH HHS R37 AI020248NIAID NIH HHS T32 AI007272NIDDK NIH HHS DK32520NIDDK NIH HHS P30 DK032520
6 · The paper itself

Abstract

The origin of the MHC class I-presented peptides are thought to be primarily from newly synthesized but defective proteins, termed defective ribosomal products. Most of the data supporting this concept come from studies in which inhibitors of protein synthesis were found to rapidly block Ag presentation even when cells contained a pool of mature proteins. However, these data only indirectly address the origin of presented peptides, and in most studies, the contribution of mature functional proteins to the class I peptide pool has not been directly quantified. In this report, we address the efficiency and contribution of mature proteins using a tetracycline-inducible system to express Ags that are conditionally stabilized upon ligand binding. This system circumvents the use of general inhibitors of protein synthesis to control Ag expression. Moreover, by controlling Ag stabilization, we could investigate whether the degradation of mature Ags contributed to Ag presentation at early and/or late time points. We show that mature proteins are the major contributor of peptides presented on class I for two distinct antigenic constructs. Furthermore, our data show that the protein synthesis inhibitors used previously to test the contribution of defective proteins actually block Ag presentation in ways that are independent from blocking Ag synthesis. These data suggest that for the constructs we have analyzed, mature functional proteins, rather than defective ribosomal products, are the predominant source of MHC class I-presented peptides.

Indexed as

Antigen PresentationAnimalsAntigensCricetinaeHeLa CellsHistocompatibility Antigens Class IHumansLigandsLymphocyte ActivationMiceMorpholinesPeptide FragmentsProtein StabilityTetracyclineT-LymphocytesAntigensHistocompatibility Antigens Class ILigandsMorpholinesPeptide FragmentsShield-1 compoundTetracycline

Identifiers

PMID24174619
PMCPMC3845381
OpenAlexW1514863737

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.