ArticleNucleic acids research2014
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 536 papers, 1 of them a synthesis that pooled it.
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536 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- Comparative transcriptomic profiling of field-grown cassava genotypes across season transitions.Scientific data · 2025Article
- Genome-wide analysis of NAC transcription factors in grain amaranth reveals structural diversity and regulatory features.Scientific reports · 2025Article
- Natural variation in regulatory code revealed through Bayesian analysis of plant pan-genomes and pan-transcriptomes.bioRxiv : the preprint server for biology · 2025Article
476 more citing papers are in PubMed but not listed here.
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5 authors.
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Abstract
With the aim to provide a resource for functional and evolutionary study of plant transcription factors (TFs), we updated the plant TF database PlantTFDB to version 3.0 (http://planttfdb.cbi.pku.edu.cn). After refining the TF classification pipeline, we systematically identified 129 288 TFs from 83 species, of which 67 species have genome sequences, covering main lineages of green plants. Besides the abundant annotation provided in the previous version, we generated more annotations for identified TFs, including expression, regulation, interaction, conserved elements, phenotype information, expert-curated descriptions derived from UniProt, TAIR and NCBI GeneRIF, as well as references to provide clues for functional studies of TFs. To help identify evolutionary relationship among identified TFs, we assigned 69 450 TFs into 3924 orthologous groups, and constructed 9217 phylogenetic trees for TFs within the same families or same orthologous groups, respectively. In addition, we set up a TF prediction server in this version for users to identify TFs from their own sequences.
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