Evidence map›Paper›PMID 24173717›Full record

ArticleMolecular biology of the cell2014

A cellular genome-wide association study reveals human variation in microtubule stability and a role in inflammatory cell death.

Raul E Salinas, Cassandra Ogohara, Monica I Thomas, Kajal P Shukla, Samuel I Miller, Dennis C Ko

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

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  8. Assessing Cytoskeletal Destruction During Pyroptosis.Methods in molecular biology (Clifton, N.J.) · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Raul E SalinasDepartment of Molecular Genetics and Microbiology, School of Medicine, Duke University, Durham, NC 27710 Department of Medicine and Center for Human Genome Variation, School of Medicine, Duke University, Durham, NC 27710 Department of Microbiology, University of Washington, Seattle, WA 98195 Departments of Medicine, Genome Sciences, and Immunology, University of Washington, Seattle, WA 98195.
Cassandra Ogohara
Monica I Thomas
Kajal P Shukla
Samuel I Miller
Dennis C Ko
Duke University · USUniversity of Washington · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI MOUGOUS, JOSEPH DAVID · 2003 to 2013
$102.3M
Functional genomics of human variation to Salmonella invasionK22AI093595 · NIAID · DUKE UNIVERSITY · PI KO, DENNIS CHUN-YONE · 2012 to 2013
$262k
NIAID NIH HHS K22 AI093595NIAID NIH HHS U54 AI057141
6 · The paper itself

Abstract

Pyroptosis is proinflammatory cell death that occurs in response to certain microbes. Activation of the protease caspase-1 by molecular platforms called inflammasomes is required for pyroptosis. We performed a cellular genome-wide association study (GWAS) using Salmonella typhimurium infection of human lymphoblastoid cell lines as a means of dissecting the genetic architecture of susceptibility to pyroptosis and identifying unknown regulatory mechanisms. Cellular GWAS revealed that a common human genetic difference that regulates pyroptosis also alters microtubule stability. An intergenic single-nucleotide polymorphism on chromosome 18 is associated with decreased pyroptosis and increased expression of TUBB6 (tubulin, β 6 class V). TUBB6 is unique among tubulin isoforms in that its overexpression can completely disrupt the microtubule network. Cells from individuals with higher levels of TUBB6 expression have lower microtubule stability and less pyroptosis. Reducing TUBB6 expression or stabilizing microtubules pharmacologically with paclitaxel (Taxol) increases pyroptosis without affecting the other major readout of caspase-1 activation, interleukin-1β secretion. The results reveal a new role for microtubules and possibly specific tubulin isoforms in the execution of pyroptosis. Furthermore, the finding that there is common diversity in TUBB6 expression and microtubule stability could have broad consequences for other microtubule-dependent phenotypes, diseases, and pharmacological responses.

Indexed as

ApoptosisPolymorphism, Single NucleotideCell DifferentiationGene ExpressionGenome, HumanGenome-Wide Association StudyHEK293 CellsHumansMicrotubulesPaclitaxelProtein StabilityTubulinTubulin ModulatorsPaclitaxelTUBB6 protein, humanTubulinTubulin Modulators

Identifiers

PMID24173717
PMCPMC3873895
OpenAlexW2089553780

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.