Evidence map›Paper›PMID 24173461›Full record

ArticleThe ISME journal2014

'Candidatus Competibacter'-lineage genomes retrieved from metagenomes reveal functional metabolic diversity.

Simon J McIlroy, Mads Albertsen, Eva K Andresen, Aaron M Saunders, Rikke Kristiansen, Mikkel Stokholm-Bjerregaard, Kåre L Nielsen, Per H Nielsen

Abstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
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  5. Comparative transcription profiles ofFrontiers in microbiology · 2025
    Article
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  7. Article
  8. Article
  9. Review
  10. Article
  11. Expanding the Diversity ofApplied and environmental microbiology · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Simon J McIlroyDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Mads AlbertsenDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Eva K AndresenDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Aaron M SaundersDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Rikke KristiansenDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Mikkel Stokholm-BjerregaardDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Kåre L NielsenDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Per H NielsenDepartment of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark. phn@bio.aau.dk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The glycogen-accumulating organism (GAO) 'Candidatus Competibacter' (Competibacter) uses aerobically stored glycogen to enable anaerobic carbon uptake, which is subsequently stored as polyhydroxyalkanoates (PHAs). This biphasic metabolism is key for the Competibacter to survive under the cyclic anaerobic-'feast': aerobic-'famine' regime of enhanced biological phosphorus removal (EBPR) wastewater treatment systems. As they do not contribute to phosphorus (P) removal, but compete for resources with the polyphosphate-accumulating organisms (PAO), thought responsible for P removal, their proliferation theoretically reduces the EBPR capacity. In this study, two complete genomes from Competibacter were obtained from laboratory-scale enrichment reactors through metagenomics. Phylogenetic analysis identified the two genomes, 'Candidatus Competibacter denitrificans' and 'Candidatus Contendobacter odensis', as being affiliated with Competibacter-lineage subgroups 1 and 5, respectively. Both have genes for glycogen and PHA cycling and for the metabolism of volatile fatty acids. Marked differences were found in their potential for the Embden-Meyerhof-Parnas and Entner-Doudoroff glycolytic pathways, as well as for denitrification, nitrogen fixation, fermentation, trehalose synthesis and utilisation of glucose and lactate. Genetic comparison of P metabolism pathways with sequenced PAOs revealed the absence of the Pit phosphate transporter in the Competibacter-lineage genomes--identifying a key metabolic difference with the PAO physiology. These genomes are the first from any GAO organism and provide new insights into the complex interaction and niche competition between PAOs and GAOs in EBPR systems.

Indexed as

MetagenomeAerobiosisAnaerobiosisBioreactorsCarbonGammaproteobacteriaGlycogenPhosphorusPhylogenyPolyphosphatesWastewaterWater PurificationCarbonGlycogenPhosphorusPolyphosphatesWastewater

Identifiers

PMID24173461
PMCPMC3930307

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.