ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Patterns of genomic integration of nuclear chloroplast DNA fragments in plant species.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 71 citations in OpenAlex.
- Episodic and Ongoing Mechanisms Drive Plastid-Derived Nuclear DNA Evolution in Angiosperms.Genome biology and evolution · 2025Article
- TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data.Molecular biology and evolution · 2025Article
- Improving the profiling of wheat bacterial and fungal endophytic communities-a PCR clamping approach.Frontiers in microbiology · 2025Article
- Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion.BMC plant biology · 2024Article
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- Promoter insertion leads to polyembryony in mango - a case of convergent evolution with citrus.Horticulture research · 2023Article
- Pangenome-based trajectories of intracellular gene transfers in Poaceae unveil high cumulation in Triticeae.Plant physiology · 2023Article
- Tracking the Distribution and Burst of Nuclear Mitochondrial DNA Sequences (NUMTs) in Fig Wasp Genomes.Insects · 2020Article
- Rampant Nuclear Transfer and Substitutions of Plastid Genes in Passiflora.Genome biology and evolution · 2020Article
- Desiccation does not drastically increase the accessibility of exogenous DNA to nuclear genomes: evidence from the frequency of endosymbiotic DNA transfer.BMC genomics · 2020Article
- Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset.BMC genomics · 2020Article
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- Long-fragment targeted capture for long-read sequencing of plastomes.Applications in plant sciences · 2019Article
- Genome defense against integrated organellar DNA fragments from plastids into plant nuclear genomes through DNA methylation.Scientific reports · 2019Article
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- Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq.Scientific reports · 2018Article
- Genetic diversity of submergence stress response in cytoplasms of the Triticum-Aegilops complex.Scientific reports · 2018Article
- Optimized Method of Extracting Rice Chloroplast DNA for High-Quality Plastome Resequencing andFrontiers in plant science · 2018Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The transfer of organelle DNA fragments to the nuclear genome is frequently observed in eukaryotes. These transfers are thought to play an important role in gene and genome evolution of eukaryotes. In plants, such transfers occur from plastid to nuclear [nuclear plastid DNAs (NUPTs)] and mitochondrial to nuclear (nuclear mitochondrial DNAs) genomes. The amount and genomic organization of organelle DNA fragments have been studied in model plant species, such as Arabidopsis thaliana and rice. At present, publicly available genomic data can be used to conduct such studies in non-model plants. In this study, we analysed the amount and genomic organization of NUPTs in 17 plant species for which genome sequences are available. The amount and distribution of NUPTs varied among the species. We also estimated the distribution of NUPTs according to the time of integration (relative age) by conducting sequence similarity analysis between NUPTs and the plastid genome. The age distributions suggested that the present genomic constitutions of NUPTs could be explained by the combination of the rapidly eliminated deleterious parts and few but constantly existing less deleterious parts.
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