ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik1995
Identification of the most represented repeated motifs in Arabidopsis thaliana microsatellite loci.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
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Who cites it
19 citing papers in PubMed, 78 citations in OpenAlex.
- Natural variation in plant telomere length is associated with flowering time.The Plant cell · 2021Article
- Advancements in molecular marker technologies and their applications in diversity studies.Journal of biosciences · 2020Review
- Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.).International journal of genomics · 2015Article
- Population structure and genetic diversity analysis of Indian and exotic rice (Oryza sativa L.) accessions using SSR markers.Molecular biology reports · 2014Article
- Structural rearrangements detected in newly-formed hexaploid tritordeum after three sequential FISH experiments with repetitive DNA sequences.Journal of genetics · 2014Article
- Genetic diversity of Pleurotus pulmonarius revealed by RAPD, ISSR, and SRAP fingerprinting.Current microbiology · 2014Article
- Identification of SSRs and differentially expressed genes in two cultivars of celery (Apium graveolens L.) by deep transcriptome sequencing.Horticulture research · 2014Article
- Polymorphism of the simple sequence repeat (AAC)5 in the nucleolar chromosomes of Old Portuguese wheat cultivars.Journal of genetics · 2013Article
- Assessment of the influence of field size on maize gene flow using SSR analysis.Transgenic research · 2012Article
- Sequence-based novel genomic microsatellite markers for robust genotyping purposes in foxtail millet [Setaria italica (L.) P. Beauv].Plant cell reports · 2012Article
- Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping.Molecular breeding : new strategies in plant improvement · 2011Article
- Development of microsatellite markers for identifying Brazilian Coffea arabica varieties.Genetics and molecular biology · 2010Article
- ISSR as new markers for identification of homokaryotic protoclones of Agaricus bisporus.Current microbiology · 2010Article
- Patterns of tandem repetition in plant whole genome assemblies.Molecular genetics and genomics : MGG · 2009Article
- Chromosomal organization of simple sequence repeats in the Pacific oyster (Crassostrea gigas): (GGAT)(4), (GT)(7) and (TA)(10) chromosome patterns.Journal of genetics · 2008Article
- Tall fescue genomic SSR markers: development and transferability across multiple grass species.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- A comparative analysis of genetic diversity in blackgram genotypes using RAPD and ISSR markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- Characterization and molecular genetic mapping of microsatellite loci in pepper.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 1997Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The major simple sequence repeats present in the Arabidopsis genome were identified by Southern hybridizations with 49 oligonucleotide probes matching all the possible combinations of motifs up to 4 nucleotides long. The method used allowed us to perform all the hybridizations under the same temperature conditions. A good correlation was observed with the data obtained from database analysis, indicating that the method can be useful for identifying the major classes of microsatellite loci in species for which few or no sequence data are available. AG/CT, AAG/CTT, ATG/CAT and GTG/CAC are the major motifs present in the Arabidopsis genome that can be used as convenient probes to isolate microsatellite loci by screening libraries. AAG/CTT is the more frequent of these motifs, and its relative frequency in Arabidopsis is much higher than averagely found in the plant kingdom. About 8% of the cDNA clones from an immature silique library contains AG/CT, AAG/CTT or ATG/CAT microsatellite loci. Several microsatellite loci were isolated by screening genomic and cDNA libraries. Twenty-six tri-nucleotide loci were PCR amplified from four different ecotypes, and polymorphism was observed for 12 of them; 10 loci showing two alleles and 2 loci showing three alleles.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.