Evidence map›Paper›PMID 24168452›Full record

ArticleACS chemical biology2013

Selective modulation of autophagy, innate immunity, and adaptive immunity by small molecules.

Stanley Y Shaw, Khoa Tran, Adam B Castoreno, Joanna M Peloquin, Kara G Lassen, Bernard Khor, Leslie N Aldrich, Pauline H Tan, Daniel B Graham, Petric Kuballa and 5 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 61 citations in OpenAlex.

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  13. Microglia and Monocyte-Derived Macrophages in Stroke.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Stanley Y ShawCenter for Systems Biology, Massachusetts General Hospital, Boston, MA.
Khoa Tran *Center for Systems Biology, Massachusetts General Hospital, Boston, MA.
Adam B Castoreno *Broad Institute of Harvard and MIT, Cambridge, MA.
Joanna M PeloquinCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA.
Kara G LassenBroad Institute of Harvard and MIT, Cambridge, MA.
Bernard KhorCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA.
Leslie N AldrichBroad Institute of Harvard and MIT, Cambridge, MA.
Pauline H TanCenter for Systems Biology, Massachusetts General Hospital, Boston, MA.
Daniel B GrahamDept. Of Chemistry and Chemical Biology, Harvard University, Cambridge, MA.
Petric KuballaCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA.
Gautam GoelCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA.
Mark J DalyBroad Institute of Harvard and MIT, Cambridge, MA.
Alykhan F ShamjiBroad Institute of Harvard and MIT, Cambridge, MA.
Stuart L SchreiberBroad Institute of Harvard and MIT, Cambridge, MA.
Ramnik J XavierCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA.
Massachusetts General Hospital · USBroad Institute · USHarvard University · USCenter for Systems Biology · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Training Grant in Molecular Imaging Research (MGH/HMS)T32CA079443 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2000 to 2025
$10.1M
ATG16L1 T300A: genetics to biologyR01DK097485 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI XAVIER, RAMNIK J · 2013 to 2021
$4.1M
Autophagy genes and the microbiome in Crohn's DiseaseR01DK092405 · NIDDK · BROAD INSTITUTE, INC. · PI XAVIER, RAMNIK J · 2012 to 2014
$2.0M
Howard Hughes Medical InstituteNCI NIH HHS T32 CA079443NHLBI NIH HHS HHSN268201000044CNIDDK NIH HHS DK 043351NIDDK NIH HHS DK092405NIDDK NIH HHS DK 097485NIDDK NIH HHS P30 DK043351NIDDK NIH HHS R01 DK092405NIDDK NIH HHS R01 DK097485
6 · The paper itself

Abstract

Autophagy is an evolutionarily conserved catabolic process that directs cytoplasmic proteins, organelles and microbes to lysosomes for degradation. Autophagy acts at the intersection of pathways involved in cellular stress, host defense, and modulation of inflammatory and immune responses; however, the details of how the autophagy network intersects with these processes remain largely undefined. Given the role of autophagy in several human diseases, it is important to determine the extent to which modulators of autophagy also modify inflammatory or immune pathways and whether it is possible to modulate a subset of these pathways selectively. Here, we identify small-molecule inducers of basal autophagy (including several FDA-approved drugs) and characterize their effects on IL-1β production, autophagic engulfment and killing of intracellular bacteria, and development of Treg, TH17, and TH1 subsets from naïve T cells. Autophagy inducers with distinct, selective activity profiles were identified that reveal the functional architecture of connections between autophagy, and innate and adaptive immunity. In macrophages from mice bearing a conditional deletion of the essential autophagy gene Atg16L1, the small molecules inhibit IL-1β production to varying degrees suggesting that individual compounds may possess both autophagy-dependent and autophagy-independent activity on immune pathways. The small molecule autophagy inducers constitute useful probes to test the contributions of autophagy-related pathways in diseases marked by impaired autophagy or elevated IL-1β and to test novel therapeutic hypotheses.

Indexed as

Adaptive ImmunityAnimalsAutophagyAutophagy-Related ProteinsCarrier ProteinsGene Expression RegulationHeLa CellsHigh-Throughput Screening AssaysHumansImmunity, InnateImmunologic FactorsInterleukin-1betaMacrophagesMiceMice, Inbred BALB CMice, KnockoutAtg16l1 protein, mouseAutophagy-Related ProteinsCarrier ProteinsImmunologic FactorsInterleukin-1betaSmall Molecule Libraries

Identifiers

PMID24168452
PMCPMC3951132
OpenAlexW2048674527

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.