Evidence map›Paper›PMID 24167279›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Symmetric GroEL:GroES2 complexes are the protein-folding functional form of the chaperonin nanomachine.

Dong Yang, Xiang Ye, George H Lorimer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Temperature Regulates Stability, Ligand Binding (MgJournal of the American Chemical Society · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. OsCpn60β1 is Essential for Chloroplast Development in Rice (International journal of molecular sciences · 2020
    Article
  13. Article
  14. Iterative annealing mechanism explains the functions of the GroEL and RNA chaperones.Protein science : a publication of the Protein Society · 2020
    Review
  15. Article
  16. The GroEL chaperonin: a protein machine with pistons driven by ATP binding and hydrolysis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
  17. Substrate protein dependence of GroEL-GroES interaction cycle revealed by high-speed atomic force microscopy imaging.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
  18. Physicochemical Properties of the Mammalian Molecular Chaperone HSP60.International journal of molecular sciences · 2018
    Article
  19. Folding of maltose binding protein outside of and in GroEL.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Dong YangCenter for Biological Structure and Organization, Department of Chemistry and Biochemistry, and Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742.
Xiang Ye
George H Lorimer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using calibrated FRET, we show that the simultaneous occupancy of both rings of GroEL by ATP and GroES occurs, leading to the rapid formation of symmetric GroEL:GroES2 "football" particles regardless of the presence or absence of substrate protein (SP). In the absence of SP, these symmetric particles revert to asymmetric GroEL:GroES1 "bullet" particles. The breakage of GroES symmetry requires the stochastic hydrolysis of ATP and the breakage of nucleotide symmetry. These asymmetric particles are both persistent and dynamic; they turnover via the asymmetric cycle. When challenged with SP, however, they revert to symmetric particles within a second. In the presence of SP, the symmetric particles are also persistent and dynamic. They turn over via the symmetric cycle. Under these conditions, the stochastic hydrolysis of ATP and the breakage of nucleotide symmetry also occur within the ensemble of particles. However, on account of SP-catalyzed ADP/ATP exchange, GroES symmetry is rapidly restored. The residence time of both GroES and SP on functional GroEL is reduced to ∼1 s, enabling many more iterations than was previously believed possible, consistent with the iterative annealing mechanism. This result is inconsistent with currently accepted models. Using a foldable SP, we show that as the SP folds to the native state and the population of unfolded SP declines, the population of symmetric particles reverts to asymmetric particles in parallel, a result that is consistent with the former being the folding functional form.

Indexed as

Models, BiologicalProtein FoldingAdenosine TriphosphateChaperonin 10Chaperonin 60Fluorescence Resonance Energy TransferGuanosineHydrolysisKineticsMultiprotein ComplexesPhosphate-Binding ProteinsThionucleosides6-mercapto-7-methylguanosineAdenosine TriphosphateChaperonin 10Chaperonin 60GuanosineMultiprotein ComplexesPhosphate-Binding ProteinsThionucleosides

Identifiers

PMID24167279
PMCPMC3832010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.