Evidence map›Paper›PMID 24166946›Full record

ArticleProteomics2013

Proteomic analysis for Type I interferon antagonism of Japanese encephalitis virus NS5 protein.

Tsuey-Ching Yang, Shih-Wein Li, Chien-Chen Lai, Kai-Zen Lu, Man-Tzu Chiu, Tsung-Han Hsieh, Lei Wan, Cheng-Wen Lin

Open access · greenAbstract read
In one paragraph

Article in Proteomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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  8. Biomolecules & therapeutics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tsuey-Ching YangDepartment of Biotechnology and Laboratory Science in Medicine, National Yang Ming University, Taipei, Taiwan.
Shih-Wein Li
Chien-Chen Lai
Kai-Zen Lu
Man-Tzu Chiu
Tsung-Han Hsieh
Lei Wan
Cheng-Wen Lin
China Medical University · TWZero to Three · USChina Medical University Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Japanese encephalitis virus (JEV) nonstructural protein 5 (NS5) exhibits a Type I interferon (IFN) antagonistic function. This study characterizes Type I IFN antagonism mechanism of NS5 protein, using proteomic approach. In human neuroblastoma cells, NS5 expression would suppress IFNβ-induced responses, for example, expression of IFN-stimulated genes PKR and OAS as well as STAT1 nuclear translocation and phosphorylation. Proteomic analysis showed JEV NS5 downregulating calreticulin, while upregulating cyclophilin A, HSP 60 and stress-induced-phosphoprotein 1. Gene silence of calreticulin raised intracellular Ca(2+) levels while inhibiting nuclear translocalization of STAT1 and NFAT-1 in response to IFNβ, thus, indicating calreticulin downregulation linked with Type I IFN antagonism of JEV NS5 via activation of Ca(2+) /calicineurin. Calcineurin inhibitor cyclosporin A attenuated NS5-mediated inhibition of IFNβ-induced responses, for example, IFN-sensitive response element driven luciferase, STAT1-dependent PKR mRNA expression, as well as phosphorylation and nuclear translocation of STAT1. Transfection with calcineurin (vs. control) siRNA enhanced nuclear translocalization of STAT1 and upregulated PKR expression in NS5-expressing cells in response to IFNβ. Results prove Ca(2+) , calreticulin, and calcineurin involvement in STAT1-mediated signaling as well as a key role of JEV NS5 in Type I IFN antagonism. This study offers insights into the molecular mechanism of Type I interferon antagonism by JEV NS5.

Indexed as

Amino Acid SequenceAnimalsCalcineurinCalcineurin InhibitorsCell LineCell Line, TumorCricetinaeCyclosporineEncephalitis Virus, JapaneseGene Expression RegulationHost-Pathogen InteractionsHumansImmunosuppressive AgentsInterferon-betaPhosphorylationProtein Processing, Post-TranslationalCalcineurinCalcineurin InhibitorsCyclosporineImmunosuppressive AgentsInterferon-betaNS5 protein, flavivirusProteomeSTAT1 protein, humanSTAT1 Transcription FactorViral Nonstructural ProteinsCalreticulinInterferonJapanese encephalitis virusMicrobiologyNon-structural protein 5STAT1

Identifiers

PMID24166946
PMCPMC7167617
OpenAlexW2107276107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.