Evidence map›Paper›PMID 24166930›Full record

ArticleMolecular carcinogenesis2015

Genetic variant rs16430 6bp > 0bp at the microRNA-binding site in TYMS and risk of sporadic breast cancer risk in non-Hispanic white women aged ≤ 55 years.

Xiaoxiang Guan, Hongliang Liu, Jingfang Ju, Yangkai Li, Peng Li, Li-E Wang, Abenaa M Brewster, Thomas A Buchholz, Banu K Arun, Qingyi Wei and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular carcinogenesis, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Association Between Genetic Polymorphisms InOncoTargets and therapy · 2019
    Article
  9. Observational
  10. Article
  11. The role of microRNAs in human breast cancer progression.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Xiaoxiang GuanDepartment of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas; Department of Medical Oncology, Jinling Hospital, Nanjing University School of Medicine, Jiangsu, China.
Hongliang Liu
Jingfang Ju
Yangkai Li
Peng Li
Li-E Wang
Abenaa M Brewster
Thomas A Buchholz
Banu K Arun
Qingyi Wei
Zhensheng Liu
The University of Texas MD Anderson Cancer Center · USDuke Medical Center · USNanjing General Hospital of Nanjing Military Command · CNStony Brook University · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
UTMDACC SPORE in Breast CancerP50CA116199 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI YU, DIHUA · 2005 to 2009
$11.9M
Molecular Epidemiology of Head and Neck CancerR01ES011740 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2001 to 2012
$6.3M
Genotypes and Phenotypes of Apoptosis and Risk of Head and Neck CancerR01CA131274 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2009 to 2013
$3.0M
Gamma-ray-induced mutagen sensitivity in breast cancerR03CA108364 · NCI · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI WANG, LI-E · 2004 to 2005
$151k
NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA116199NCI NIH HHS R01 CA131274NCI NIH HHS R03 CA108364NIEHS NIH HHS R01 ES011740NIEHS NIH HHS R01ES011740
6 · The paper itself

Abstract

Thymidylate synthase (TYMS) is involved in the folate metabolism and provision of nucleotides needed for DNA synthesis and repair. Thus, functional genetic variants in TYMS may alter cancer risk. In the study, we evaluated associations of three germline variants (rs2790 A > G, rs16430 6 bp > 0 bp, and rs1059394 C > T) in the predicted miRNA-binding sites of TYMS with risk of sporadic breast cancer in non-Hispanic white women aged ≤ 55. We found that carriers of the rs16430 0 bp variant allele had an increased risk of breast cancer [adjusted odd ratio (OR) = 1.37, 95% confidence interval (CI): 1.08-1.73; P = 0.010], compared with carriers of the 6 bp/6 bp genotype. This increased risk was more evident in older subjects (OR = 1.47, 95% CI = 1.06-2.03, P = 0.022), never smokers (OR = 1.67, 95% CI = 1.23-2.25, P < 0.001), never drinkers (OR = 1.44, 95% CI = 1.01-2.05, P = 0.043), and estrogen receptor-positive patients (OR = 1.46, 95% CI = 1.11-1.92, P = 0.006), regardless of tumor stages. The results are consistent with the functional analyses of rs16430 as previously reported, which showed that the 0 bp allele had a decrease in both luciferase activity by ∼ 70% and mRNA levels by ∼ 50% compared with the 6bp allele. Additionally, the rs16430 variant was predicted to influence the binding activity of miR-561. Taken together, these findings indicate that the TYMS rs16430 may contribute to the etiology of sporadic breast cancer in non-Hispanic white women aged ≤ 55 yr. Further validation in large population-based or cohort studies is needed.

Indexed as

Polymorphism, Single Nucleotide3' Untranslated RegionsBase SequenceBinding SitesBreastBreast NeoplasmsFemaleGenetic Predisposition to DiseaseGenetic VariationHumansLinkage DisequilibriumMicroRNAsMiddle AgedRisk FactorsSequence AlignmentThymidylate Synthase3' Untranslated RegionsMicroRNAsMIRN561 microRNA, humanThymidylate Synthasebreast cancergenetic susceptibilitymicroRNAmiR-561molecular epidemiologyTYMS

Identifiers

PMID24166930
PMCPMC4464775
OpenAlexW2138980442

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.