Evidence map›Paper›PMID 24165940›Full record

ArticleThe Journal of cell biology2013

Atg38 is required for autophagy-specific phosphatidylinositol 3-kinase complex integrity.

Yasuhiro Araki, Wei-Chi Ku, Manami Akioka, Alexander I May, Yu Hayashi, Fumio Arisaka, Yasushi Ishihama, Yoshinori Ohsumi

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 2 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 2 syntheses or guidelines pooled it, 113 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Article
  4. The ATG14: multi-layer autophagy control and an emerging therapeutic target in cancer.Apoptosis : an international journal on programmed cell death · 2026
    Review
  5. Article
  6. The human autophagy-initiating complexes ULK1C and PI3KC3-C1.The Journal of biological chemistry · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Protein modification regulated autophagy inFrontiers in physiology · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Molecular regulation of autophagosome formation.Biochemical Society transactions · 2022
    Review
  17. Review
  18. Review
  19. Review
  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yasuhiro ArakiFrontier Research Center, Tokyo Institute of Technology, Yokohama 226-8503, Japan.
Wei-Chi Ku
Manami Akioka
Alexander I May
Yu Hayashi
Fumio Arisaka
Yasushi Ishihama
Yoshinori Ohsumi
Tokyo Institute of Technology · JPKyoto University · JPMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy is a conserved eukaryotic process of protein and organelle self-degradation within the vacuole/lysosome. Autophagy is characterized by the formation of an autophagosome, for which Vps34-dervied phosphatidylinositol 3-phosphate (PI3P) is essential. In yeast, Vps34 forms two distinct protein complexes: complex I, which functions in autophagy, and complex II, which is involved in protein sorting to the vacuole. Here we identify and characterize Atg38 as a stably associated subunit of complex I. In atg38Δ cells, autophagic activity was significantly reduced and PI3-kinase complex I dissociated into the Vps15-Vps34 and Atg14-Vps30 subcomplexes. We find that Atg38 physically interacted with Atg14 and Vps34 via its N terminus. Further biochemical analyses revealed that Atg38 homodimerizes through its C terminus and that this homodimer formation is indispensable for the integrity of complex I. These data suggest that the homodimer of Atg38 functions as a physical linkage between the Vps15-Vps34 and Atg14-Vps30 subcomplexes to facilitate complex I formation.

Indexed as

AutophagyAutophagy-Related ProteinsClass III Phosphatidylinositol 3-KinasesGene Expression Regulation, FungalGenotypeImmunoprecipitationMultiprotein ComplexesMutationPhenotypeProtein Interaction Domains and MotifsProtein Interaction MappingProtein MultimerizationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionVacuolar Sorting Protein VPS15Atg38 protein, S cerevisiaeAutophagy-Related ProteinsClass III Phosphatidylinositol 3-KinasesMultiprotein ComplexesSaccharomyces cerevisiae ProteinsVacuolar Sorting Protein VPS15Vesicular Transport ProteinsVPS15 protein, S cerevisiaeVPS30 protein, S cerevisiae

Identifiers

PMID24165940
PMCPMC3812978
OpenAlexW2151084479

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.