ArticleNucleic acids research2014
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
55 citing papers in PubMed.
- Gut microbiota and tuberculosis.iMeta · 2025Review
- Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data.Nature methods · 2024Article
- The African Human Microbiome Portal: a public web portal of curated metagenomic metadata.Database : the journal of biological databases and curation · 2024Article
- OBMeta: a comprehensive web server to analyze and validate gut microbial features and biomarkers for obesity-associated metabolic diseases.Bioinformatics (Oxford, England) · 2023Article
- Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions.Foods (Basel, Switzerland) · 2023Review
- Interactive Web-Based Services for Metagenomic Data Analysis and Comparisons.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Bacterial Adaptation to Venom in Snakes and Arachnida.Microbiology spectrum · 2022Article
- Inputs of Terrestrial Dissolved Organic Matter Enhance Bacterial Production and Methylmercury Formation in Oxic Coastal Water.Frontiers in microbiology · 2022Article
- MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen.BMC microbiology · 2021Article
- Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data.Scientific reports · 2019Article
- Enhanced Microbial Bile Acid Deconjugation and Impaired Ileal Uptake in Pregnancy Repress Intestinal Regulation of Bile Acid Synthesis.Hepatology (Baltimore, Md.) · 2019Article
- NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes.Microbiome · 2019Article
- Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks.GigaScience · 2019Article
- A Review on Viral Metagenomics in Extreme Environments.Frontiers in microbiology · 2019Review
- The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.FEMS microbiology ecology · 2018Article
- A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.Microbiome · 2018Article
- ASaiM: a Galaxy-based framework to analyze microbiota data.GigaScience · 2018Article
- Flexible metagenome analysis using the MGX framework.Microbiome · 2018Article
- EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.Nucleic acids research · 2018Article
- Identification of fungi in shotgun metagenomics datasets.PloS one · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
23 authors.
Funding
Abstract
Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.