Evidence map›Paper›PMID 24164513›Full record

ArticleJournal of medicinal chemistry2013

Structure-activity relationships and molecular modeling of sphingosine kinase inhibitors.

Dong Jae Baek, Neil MacRitchie, Nahoum G Anthony, Simon P Mackay, Susan Pyne, Nigel J Pyne, Robert Bittman

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Structural insights into sphingosine-1-phosphate receptor activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Sphingosine-1-phosphate metabolism: A structural perspective.Critical reviews in biochemistry and molecular biology · 2015
    Review
  19. Crystal Structure of Sphingosine Kinase 1 with PF-543.ACS medicinal chemistry letters · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dong Jae BaekDepartment of Chemistry and Biochemistry, Queens College, The City University of New York , Flushing, New York 11367-1597, United States.
Neil MacRitchie
Nahoum G Anthony
Simon P Mackay
Susan Pyne
Nigel J Pyne
Robert Bittman

Funding

Synthesis of Novel Bioactive Sphingolipids as a ResourceR24HL083187 · NHLBI · QUEENS COLLEGE · PI BITTMAN, ROBERT · 2006 to 2013
$2.5M
British Heart Foundation 29476NHLBI NIH HHS HL-083187NHLBI NIH HHS R24 HL083187
6 · The paper itself

Abstract

The design, synthesis, and evaluation of the potency of new isoform-selective inhibitors of sphingosine kinases 1 and 2 (SK1 and SK2), the enzyme that catalyzes the phosphorylation of d-erythro-sphingosine to produce the key signaling lipid, sphingosine 1-phosphate, are described. Recently, we reported that 1-(4-octylphenethyl)piperidin-4-ol (RB-005) is a selective inhibitor of SK1. Here we report the synthesis of 43 new analogues of RB-005, in which the lipophilic tail, polar headgroup, and linker region were modified to extend the structure-activity relationship profile for this lead compound, which we explain using modeling studies with the recently published crystal structure of SK1. We provide a basis for the key residues targeted by our profiled series and provide further evidence for the ability to discriminate between the two isoforms using pharmacological intervention.

Indexed as

Models, MolecularBenzamidesEnzyme InhibitorsHumansHydrophobic and Hydrophilic InteractionsPhosphotransferases (Alcohol Group Acceptor)PiperidinesProtein ConformationQuaternary Ammonium CompoundsSphingosine KinaseStructure-Activity RelationshipTriazoles1-(4-octylphenethyl)piperidin-4-olbenzamideBenzamidesEnzyme InhibitorsPhosphotransferases (Alcohol Group Acceptor)PiperidinesQuaternary Ammonium CompoundsSphingosine KinaseTriazoles

Identifiers

PMID24164513
PMCPMC3848335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.